Rhincodon typus (whale shark): 109916425
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Entry
109916425 CDS
T06055
Symbol
ddx27
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109916425 (ddx27)
03009 Ribosome biogenesis [BR:
rtp03009
]
109916425 (ddx27)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109916425 (ddx27)
Spliceosome [BR:
rtp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109916425 (ddx27)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
Pre-60S particles
Helicases
109916425 (ddx27)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
Cas3-like_C_2
RNase_PH
Motif
Other DBs
NCBI-GeneID:
109916425
NCBI-ProteinID:
XP_020371729
LinkDB
All DBs
Position
19:51602889..51644949
Genome browser
AA seq
776 aa
AA seq
DB search
MATLDLIRTIGEEDEVPEEEETGSEGEEPPITLLKRKKLRKKCVDFSEDFLFTEKDGEYD
DSWMMADVLSQLKKNKAPTTLDEKIDKVRKKRKKEEKSTKEAKGLRTDSTESKPDTVEED
EEELDQAEANDDAEESDEEKNAEIEEDDESISEFSSADEDILQKADTLKLKGKKRKRKVP
GDESGVSFEDAPQFDEGLTFQDMNLSRPLLKAITAVGFKQPTPVQKACIPLGLLGRDLCA
CAATGTGKTAAFMLPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVSRQLAQFTSISL
CLAVGGLDVKTQEASLRAGPDVLIATPGRLIDHLHNCPSFDLSSIEVLILDEADRMLDEY
FEEQMKEIIRLCSHQRQTMLFSATMTDEVKDLASVSLKSPVRIFVNSNTDVAPFLRQEFI
RIRPNREGDREALVSALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGDLSQT
QRLEALRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPNTVKHYVHRVGRTARAGRS
GRSVSLVGETERKMLKEIVRKAKTEVKARVIPQEVVTKFRDKIEKLEKEIYAVLQLEKEE
KILQRSEAQINTAKNKLQKNSEETRPERTWFQTREERKKEKIAKALQEFDIALRGKKKRK
SFMENIKKKGEMTAEERTQFEIMKSQMYAERVAKRGRRPKRARAMPEDEPKPTAGNKKNR
TNKSKKSMFDEELTNTSQKALKQYRAGPSFEDRKRLGITQHRKGGSFKSKSRYKRR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggctactttggacttaatcaggacgattggagaggaggacgaggttccggaggaggag
gagacgggctctgagggagaggagccacctatcaccttactgaagagaaagaagttgagg
aagaaatgtgtggacttcagtgaagacttcctgttcactgaaaaagatggggaatatgac
gacagctggatgatggcagatgtcctgagtcaactgaaaaagaataaggcaccaacaacc
ctggatgaaaagatagacaaagtacgaaagaaaagaaaaaaagaggagaaatctacaaaa
gaagcaaaggggttaagaaccgactctactgagtccaaaccagatacagtagaagaagat
gaggaagaactggatcaggcagaggccaatgatgatgctgaggaatctgacgaagagaaa
aacgcagaaattgaggaagacgatgagtcaatatccgagttctcctcagcagatgaagat
attttacagaaagcagacacactgaaattgaaggggaagaagagaaagagaaaagttcca
ggggacgaatcgggtgtgtcctttgaggacgcccctcaatttgacgaaggtttgacattc
caggatatgaatctctcgcgaccgctgttaaaggcaattactgcagtgggcttcaagcaa
ccaacccccgttcagaaggcatgtattccattaggcctgctcggcagagacctttgtgca
tgtgctgctactggaacaggtaaaactgctgccttcatgctgccagtcctagaacgcttg
atctataaaccgcgacaggctcctattactcgggtgttggttctagttccaactcgtgag
cttggcattcaagttcactctgtctccaggcaattggcgcagttcacatccatctccctc
tgtctcgctgttggtggactggatgtaaaaacccaagaggcatctctgagggcggggccc
gatgttctcattgccacccctggccgattaattgatcaccttcacaactgtccatccttt
gacctcagcagcattgaggtcctcattctcgacgaagcagacagaatgctggatgagtac
tttgaggaacagatgaaggagataattcgtctctgctcccatcagcgacagacaatgtta
ttctctgccaccatgactgatgaggtgaaagacctagcatcagtgtcactgaagagtcca
gtgcgaatttttgtgaacagtaacactgatgtagcaccattccttcgtcaggaattcatc
cggatccggccaaaccgtgagggtgacagagaagcccttgtttcagctcttctgactcgt
acatttcaggatcatgtcatgctgttcacacagactaaaaagcaggcccatcgaatgcac
atcctcctggggctgatgggattgaaggttggcgagctacacggtgacctctctcaaaca
cagcgactggaggcccttaggcgctttaaagatgagcagatcgatattcttgtggctact
gatgttgcagctagagggctggacattgatggggtcaaaacggtaataaacttcacaatg
cccaataccgttaagcattacgtgcacagagtaggccgtacggcacgagcgggccgtagt
ggacgatccgtttcccttgtcggtgaaacagaaaggaaaatgttgaaagagattgtgagg
aaagccaaaactgaagtcaaagctcgggtcatcccacaagaggtggtgacaaagttcagg
gacaagatagagaaactggaaaaggaaatctatgctgtgctgcagctcgaaaaggaggag
aagatccttcagcgatcggaggctcagattaacactgccaaaaacaagttacagaagaac
agtgaagagacaagaccagagcgtacctggtttcaaaccagagaggaacggaagaaagag
aaaattgcaaaggctcttcaggaatttgacattgccttaagaggcaaaaagaagcgaaaa
tcgttcatggaaaatattaagaaaaaaggagagatgacagcagaagagaggacacagttt
gaaatcatgaaatcgcagatgtacgcagaacgcgtcgctaagcgaggccgtaggccaaag
agagcgagagcaatgcctgaggatgagccaaagcccacagcagggaataaaaagaacaga
acaaacaaatcaaagaagtctatgtttgatgaagaattaacaaatacaagtcaaaaggcc
cttaaacagtacagagctgggccttcctttgaggatcgaaagagacttgggataacgcaa
cacaggaaaggcggttcctttaaatccaagtccaggtacaagaggagatga
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