Rhincodon typus (whale shark): 109916895
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Entry
109916895 CDS
T06055
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a
KO
K13091
RNA-binding protein 23/39
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109916895 (rbm39a)
Spliceosome [BR:
rtp03041
]
Common components
Common spliceosomal components
General mRNP proteins
109916895 (rbm39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBM39linker
RRM_1
RRM_occluded
RBD_DEAH11
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
109916895
NCBI-ProteinID:
XP_048464552
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All DBs
Position
19:7739952..7751980
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AA seq
317 aa
AA seq
DB search
MIPCMASKRRLTYVICVKQAEKNRAAALANNLQKGTAGPMRLYVGSLHFNITEEMLRGIF
EPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERS
DSSNASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGNISLGAM
AAVTDLQARIIQQTEALNPPATVNTPPIATQCFQLSNMFNPQSEDDPAWDQEIRDDVIEE
CNKHGGVIHIFVDKNSPQGNVYVKCPTIAAAAAAVGALHGRWFAGKMITAAYVPLPTYHN
LFPDSLTTTQLLTPARR
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgattccatgtatggcttcaaagagaaggttaacttatgtcatttgtgtgaaacaggct
gagaagaaccgagcagcagctcttgctaacaacctacagaaaggcactgcaggaccaatg
aggctatatgtaggatcgttgcacttcaatattactgaagaaatgttgagaggaattttt
gagccctttgggagaattgaaaacattcaactgatgatggatagtgaaacagggcggtca
aaaggctatggattcataacattttctgatgctgagtgtgcaaagaaggctctggaacag
ctaaatggctttgagcttgctggtagaccaatgaaggttggtcatgttacagagcgatcg
gattcatccaatgcaagctcgttcctggacagcgatgaactggagaggaccggcattgac
cttggaacaacagggcgcctgcagttgatggctaggcttgcagaaggaacagggttacaa
attcccccagcagcacagcaagcattgcagatgagtggcaatatttcattaggtgccatg
gcagcagtaacggacttgcaagcaagaattatccaacagactgaagcactgaatccccct
gcgactgtaaatactccaccaatagcgacgcagtgttttcagctctccaacatgtttaac
ccacagtcggaagatgatccagcctgggaccaagaaattcgcgatgatgtgattgaagaa
tgtaacaaacatggaggagtcattcatatatttgtggacaaaaattcaccccagggaaat
gtctatgtaaagtgcccgaccattgctgctgcagctgctgctgttggtgccttgcatgga
aggtggtttgctggaaaaatgatcacggctgcatatgtgccactcccaacctaccacaat
ctcttcccagattcattgacaactacccagctgctgactccagcaagacgatag
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