Rhincodon typus (whale shark): 109916974
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Entry
109916974 CDS
T06055
Name
(RefSeq) TATA-binding protein-associated factor 2N-like isoform X1
KO
K14651
transcription initiation factor TFIID subunit 15
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109916974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109916974
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109916974
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109916974
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
109916974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Zn_ribbon_RanBP
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
109916974
NCBI-ProteinID:
XP_048449058
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MSDYGNYSQPGAQAQSYGAYGAQSNQNYGHASQGYGGYEQSGGASGYGQSQSGYGSSYGQ
GQSGLNSSQSSTGYRQSGHSYGSESSHNTYGQQPLYGNYGQHSDSPSSYGSKSETQYSTQ
QSQPSYSHSTSYHPPHDNYGQQTSGDDYEQDRPSRSKFGDDNRSFGRSQGNGGRGRGGYG
HGGFDGDGRGGRGRMGGGDRGGFNNFGGSRDRGQGPNPASDDNADNNTIFVQGLGDDVTT
EQVADFFKQIGVIKINKKTGNAMINLYTDKVTGKLKGEATVSFDDPPSAKAAIDWFDGKD
FHGNTIKVSFATRRSEFVRGGRGGRGGQMGRGGRAFQGGGGPRGEDWTCPNPSCGNVNFA
WRNECNQCKTPRGDGGMYCLFVFFESMFLIFFVLYFPKL
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattatggaaattacagtcaacctggagctcaagcacaaagctatggagcctat
ggtgcccagtcaaaccaaaactatgggcatgcttcacagggttatggtggatatgagcag
tctggtggtgcttctggatatggacaaagccaaagtgggtatggttcaagttatggacaa
ggacagtcagggttaaattcttctcaatcttcaacaggctatcgacagagtggacacagc
tatggaagtgagagctcccataatacttacggacagcaaccattgtatggaaattatggg
cagcattcagattcccctagcagctatggctcaaagtctgagacacaatatagtacccag
caaagccaaccaagttacagccactccacttcgtatcatccacctcatgacaactacggc
caacagacctcaggagatgactatgagcaagatagacctagcaggagtaaatttggagat
gacaaccggagctttggcagatcacagggtaatggaggtagaggtcgtggaggatatggt
catggtggctttgacggtgatggtagagggggacgtggtagaatgggtggtggtgatcgt
ggtggcttcaataattttggtggctcaagagatcgtgggcaaggacctaatcctgcttct
gatgacaacgctgataacaacaccatttttgtccagggtcttggagatgatgtgacaact
gaacaagttgctgatttctttaaacagattggcgtgattaagattaataagaaaactgga
aatgccatgatcaacctttatacggacaaagttacaggcaaactaaaaggtgaagcgaca
gtgtcttttgatgacccaccatcagcaaaagctgcgattgattggtttgatggaaaggat
ttccatggaaacacaataaaagtttcctttgcaacaaggcgatcagagtttgtacgaggt
ggtagaggcggtcgtggaggtcaaatgggcagaggtggtcgtgcttttcagggtggtggt
ggtccaagaggtgaagattggacttgcccaaatccgtcatgtggtaatgtcaactttgct
tggagaaatgaatgtaaccagtgtaaaactcctagaggtgatggtggtatgtattgtttg
tttgttttttttgaaagcatgtttttaatcttttttgtcttgtatttcccaaagctttga
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