Rhincodon typus (whale shark): 109917243
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Entry
109917243 CDS
T06055
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
109917243 (lrrc4ca)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
LRR_1
Ig_3
ig
LRR_14
LRR_9
V-set
Ig_2
LRRNT
LRR_R13L1-DRL21
Herpes_gE_N
Sp38
Ig_6
Syndecan
Motif
Other DBs
NCBI-GeneID:
109917243
NCBI-ProteinID:
XP_020372622
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All DBs
Position
17:45486927..45499729
Genome browser
AA seq
640 aa
AA seq
DB search
MLNKMTLHPQQMMIGPKFNRAVLDPLFVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSKV
ICTRRNLREVPDSISINTRYLNLQENGIQVIKADSFKHLRHLEILQLSKNHIRQIEVGAF
NGLTNLNTLELFDNRLSTIPSGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDLG
ELKRLEYISDRAFEGLSNLRYLNLGMCNLREIPNLTPLTKLEELELSGNRLSLIRPGSFQ
GLTNLQKLWMMHAQIQVIERNAFDDLQSLIELNLAHNNLTLLPHDLFTPLHHLERVHLHH
NPWNCNCDILWLSWWLKEIVPSNTTCCARCHAPPSLKGNYIGELDQNKFNCYAPVIVEAP
ADLNLTEGMAAELKCRASTSMTSVSWITPNGTIMTHGAYKVRISVLNDGTLNFTNVTAQD
TGLYTCLVSNSAGNTTASATLNVTATENSTFTYFTTVTVETVEPSVQVHTTDDKFRPTPF
SDWDTTFVTTSLTPRSTKSTEKTVTVAITDAGGNLMPGLDEVMKTTKIIIGCFVAITLMA
AVMLIIFYKMRKQHHHQNHHAPTRTVEIINVGDDIAGSTAMESHLTIPAIEHEHMNHYNS
YKTPFNHSTTVNTINSLHSSVHDPLLMRVNSKDNVQETQI
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgacattgcatccacagcagatgatgataggtccaaagtttaacagg
gccgtactcgaccccttatttgtgctgctgttggctctacaactcctcgtggtggccggt
ttggtcagagctcagacttgtccttcagtgtgctcctgcagcaaccagttcagcaaagtg
atctgcacacgccggaacttgagagaagtaccagatagcatctccatcaacacacgctat
ttgaacctgcaagagaacgggatccaagtcatcaaagccgacagcttcaagcatttaagg
cacctggagattctacagttaagtaagaaccacatccggcaaattgaggttggggccttc
aatggcctaacaaatctcaacaccctggagctgttcgacaaccgcctctccaccattccc
agtggagcttttgaatacctctccaaactgaaggaactgtggttgaggaacaatccaata
gaaagcataccatcatatgctttcaatcgagttccttcccttcggagattagacttaggt
gaacttaagagacttgaatacatttctgatagagctttcgaaggtctgtcaaacttaaga
tatctgaacctcggtatgtgtaatcttcgggaaatcccaaacctcacgcctctgaccaaa
ctggaggaactggaactatcagggaatcggctttcgctaatccgaccgggatcctttcag
ggtttgactaacctgcagaaactgtggatgatgcatgctcagatccaggtgattgagagg
aatgccttcgatgaccttcagtcactaatagagcttaacctggcgcacaacaacctgact
ttgctgcctcacgacctcttcacccccctccaccacctggagcgagtccacttgcatcac
aacccgtggaactgtaattgtgacattttgtggctgagttggtggctgaaggagatagtg
ccatccaacacaacgtgctgcgcgcgctgccatgcgcccccaagtttaaaagggaattat
attggcgaactggaccagaacaagttcaactgctacgctccagtcattgtcgaggctcct
gctgacctcaatctgacagagggaatggctgcagaattaaagtgtcgcgcatcaacctcc
atgacttcagtgagctggattactccaaatggcacaatcatgacccatggagcttacaaa
gtccggatttctgtgcttaatgacggcacgttaaattttacaaatgttactgcccaggac
acggggttgtacacatgtttggtgagtaattcagcagggaacacgacagcttcagctacg
ctaaacgtgactgctacagaaaacagcaccttcacttatttcactactgtcaccgtggag
actgtggagccgtctgtacaggtacacacgacagacgacaaatttagacctacacctttc
agcgactgggatactacgttcgtgacaacgtccttaactcctcggagtacaaagtcgacg
gaaaaaacagtcactgttgctattactgatgcaggagggaatctcatgccaggcctggat
gaggtgatgaaaactacaaagattattattggttgctttgtggctatcacactgatggcg
gctgtgatgttaatcattttttacaaaatgcgtaaacagcatcaccatcagaaccatcat
gctcccaccaggaccgtcgagatcatcaatgtaggtgatgacatcgcaggaagtactgcc
atggagagtcacctgaccatacccgctatagagcatgagcatatgaaccactataactct
tataaaactccgttcaaccacagcaccacagtaaacacaataaactcactacacagctct
gtgcatgatccattactgatgcgagtgaactctaaggacaatgtacaagagacacaaata
tga
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