Rhincodon typus (whale shark): 109917255
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Entry
109917255 CDS
T06055
Name
(RefSeq) FRAS1-related extracellular matrix protein 2
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109917255
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
rtp04091
]
109917255
Lectins [BR:
rtp04091
]
C-Type lectins
Lecticans
109917255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
Stevor
Syndecan
Motif
Other DBs
NCBI-GeneID:
109917255
NCBI-ProteinID:
XP_048454269
LinkDB
All DBs
Position
6:complement(24869000..25092504)
Genome browser
AA seq
3120 aa
AA seq
DB search
MGSLQQRGESKCFCLCVARLLLLLALTVTGSTRGYESLESAELYYGFMSGLSEDSILLAN
NGIRVPFGRSVELDPIHDLVIQVQPGDKCTVTVLGNDPLSQRPGQLSPKKFPCDFGRDEV
KYSHFGSRSPSRDRVKLQLRYDSQTDTVIIPFMLEVEVVFTQLEIVTRNLPLTVERLLGT
SNAIDRKVLELSYQPSWQRCRLATLSGAGGLPRYGRLVDERRGGSGGQLLDCQEFLDSGV
RYRHMAATGSPNRDYIPAVVELHDAEGQLLKQEYFQIVVRIRGGADNTAPKPSFVAMMMM
EVDQFVLTAITPDMLAAEDAESEPGELVFNITSPPPLGSVVSTDDRHLPITSFYQRDLQE
LKIAYQPPAADSDHERIFQIEFEVVDTEGAVSEPFAFVVVVKPMNTLAPVVSRNTGQLLY
EGQSRALSSSRNLQLSDEDNLHEVRLTVLDGLRHGQLTVLGSRRKFFTAADLDAGTVLYQ
HDGSDTYSDNIVFRMTDGAHDVEFLFPITVVPTDDEPPVVNANTGLSVPEHQAAPISPFV
LSATDVDSEDSTIRFALEPPVPGLGEMVLRQVEPPADPSSWQYTERAGAYEKVVMEWSQQ
DIMNGRLFYRHVGPHSTEAVMEQLVFRVQDDNDPPNQSGEHTFVIKIQPVDDIAPELYPG
TTLQMIVEEYRLTHFRRKFLRYTDLDSDDRDLRYTITKPPTDTDENNPVQMGNIVLTESP
NTLVGEFTQAQVNHHKIAYRPPDVELGITPHVVQFEFTVEDTAGNSVDGTFTIFLQPVDN
KPPQITNTGFIMFERDTYIITSAELDATDPDTDGPQITFTLSQLPKHGQLQYAGVTITEG
EAFNLNDISNGKIAYVHNGDESTGDSLKIDVSDGVHTVTITVKVTVRPVDDEVPTITLPV
GTIGSYLDVLENGATEITTNVIQGTDEDTDDLRLTFIVEDQPQLGEILVNGIPSESFTQQ
DIINGVVIYAHTDGEIGLQKKEDSFNLTLTDMSDEWNIGGNKVQGVRVQVTVLPVDSQAP
NVIVGKQFTVVEGDKNTISQKHLKAEDFDTPNDDILCTIIVQPTSGYVENISPAPGSETS
RAGTAITAFTFKEIRLGHINYVQSIHKTVEPVEDRFTFRCSDGINFSERHFFPIVIIPAN
DEKPDIFMREFVVMEGMSLVIDTPILNAADADIPANELTFSIIKPPKHGQIVNQLTTGTV
LVNSFTLGQIREGSSIVYEHDDSETKEDSFDVRLTDGKYSVEKTVIIMVIPVDDETPRMT
VNNGLEIEIGETKVINDKVLKATDLDSEDKTLVYIIRYGPSQGLLQQLVPSGKFKNITVG
MNFTQDDIDKNLIHYTHTGQEGIRDLIKFDVTDGVNPLIDRYFYVSIGGIDMIFPDVVSK
GVSLKEGGRVTLTTDLLSTTDLNSPDENLLFSITRAPVRGHLECTDEPGVPVTTFSQLQL
AGNKIYYIHTSDDEVKMDSFEFEVTDGYNPVFRTFRISISDVDNKKPVLTFHDLMVNEGD
VKLITPFELTVEDRDTPDHLLRFTVTQVPVHGQLLFNRTISITSFTKQDLNENLISYKHD
GTEFSEDSFSFTVTDGTHTDFYVFPDTVFETRKSQMMRIRTMPIDNGVPQIIVNKGAPTL
RGLTTGHLGFMITSKALKAEDRDSVHSALRFKILEGPEHGYLIHMGKGNESVTGFTQGEI
DNMKICYVLKEGHNATSDVFHFSVEDSGGNKLKNQLFRLNWAWISLEKEYYLIDENSKFL
EVTLKRRGYLGETSFVGIGTKDGTAEKDKDFRGKSQKQVQFNPGQTTASWRVRILTDNEY
EQSETFQIVLSEPVMAVLEFPEIATVEIVDPGDESTVFIPKSSYSIDEDIGELLIPVMRT
GDTSQELMVICSTHQGSATGTIPSSVLSYSDYITRAEDHHSVIRFDKDETEKLCHVVIID
DSLYENKETFNVTLSMAMGGKIGVHPSTQIIILPDVNDEPVFYFGDTEYQVDESEGYVEV
QVWRTGTDLSKTATVTIRSRKTEPASAEAGIDYVGISRNLDFAPGVNMQTFRVTILDDLG
QPALEGPERFELVLRMPVNAVLGEPSKTTVLINDSVSDLPKVQFKDAAYVGKENDGQITA
IVYRSGDTSYKSTVRCYTRQASAQVMMDFAERPNTDDSIITFLPGEIEKPCTVTLNDDTI
HEEDEDLRLVLGTPKSESPFGASIGEKNETVIKIKDGADKAIIKFGETKFSISEPKEPGQ
IAVVKIPVLRLGDTSKVSIVRVHTKDGSAISGEDYHPLSEEIEFKESETEHFVEVEVLYD
GVREMREAFTVHLKPDENMVAETQINKAIIYIEEMNSMADVTFPSVPQVVSLLIYDDTSR
ATETPSPLAGYPVVCVTACNPKYSDYDKTGSICTSENINDTLTHYRWLVSAPTGPDGVTS
PMREVDSNTFFTSSKMITLDSIYFQAGSRVQCAARAVNSNGDEGLELMSPIVSINIEEGL
CQPRVQGAVGAEPFSAKLRYTGSEDPDHPNLIKVTVTMPHIDGMLPVISTRQLSNFELTL
SPDGTRVGNHKCSNLLDYNEVKTRYGFLSDSTKNPEVIGETAPYQYSSSLRGSSTLRFYR
NLNLEACLWEFESFYDMSELLTDCGGTIGTDGQVLNLVQSYVTLRVPLYVSYVFHSPVGV
GGWQHFDLQSELRLTFVYDTAILWRDGIGSPPEAELQGALYPTSMRINSEGRLVVNFRTD
ARFQGLFVMSHAASPLSSMVMSADHPGLTFTLSLVRTEPTYNHPEQQWSFTSDFAVRDYS
GTYTVKLIPCVSAPSQEYTIPIVCNPREPITFDLDIRFQQVSDPVAAEFSLNTQMFLLNR
RGLWLSDGSMGFGEGSDVAFTEGSVVYGRVMVDPVQNLGDSFHCSIEKVFLCTGADGYVP
KYDPINSEYGCLADSSSLLYRFKILDKAQPETQDPYFGNVAFNAKLAIDDPEAIALSRQP
GSDGFRIDSSPLFQVAAGREWYIHAIYTVRSRDTASRGIGKRSVEHHILSHSGSVSSVGH
SRQRRSVKETPVLAEDIGIENNRGTNIQHIALDRSNRKKVVEEEIHPEGAVARSPNDRGD
KIGNVPIIGGIAALILAICVVIIIVVLLKRRKQSDKGAYKKSCRIQTMTAQNYHSDSSEV
NT seq
9363 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtttgcagcagagaggggagagtaagtgcttctgtttgtgtgtggccaggctg
ctgttgttgttggctctgacagtgacaggtagcacaaggggctatgagagtttggaaagt
gcagaactttattacggatttatgtcgggactgtccgaggactccatccttctggccaac
aacggtatccgtgtgcccttcggccgctcggtcgagctggaccccatccacgacctggtc
atccaggttcagccgggagacaagtgcacggtcactgtcctgggcaacgacccactgtcg
cagcggccgggccagctgagtcccaagaagttcccgtgcgatttcgggcgggacgaggtg
aaatactcgcacttcggctcccggagcccgtcccgggaccgggtgaagctgcagctgagg
tacgacagccagacggacacggtgatcatcccgttcatgctggaggtcgaggtggtcttc
acccagctggagatcgtcacccgcaacctgccgctgaccgtcgagcgcctcctgggcacc
agcaacgcgatcgaccgcaaggtgctggagctgagctaccagcccagctggcagcgctgc
cgcctcgctaccttgagtggcgccggcggcctccctcgctacgggcggttagtggacgag
aggcgaggaggtagtggtggtcagttgctggactgccaggagttcctggactcgggcgtg
cggtaccgccacatggcggccaccggctcgcccaaccgagactacatcccggcggtggtc
gagctgcacgacgccgagggccagctgctgaagcaggaatacttccagatcgtggtgcgc
atccgcggcggagcggacaacacggcgcccaagcccagcttcgtggccatgatgatgatg
gaggtggaccagttcgtgctgaccgccatcactccggacatgctggcggccgaggacgcc
gagtccgagcccggggagctggtcttcaacatcacgtcgccgccgccgctcggctcggtg
gtcagcaccgacgaccggcacctgcccatcacctccttctaccagcgcgacctgcaggag
ctgaagatcgcttaccagccgccggccgccgactccgaccacgagaggattttccagatc
gagttcgaggtggtggacaccgaaggcgccgtgtccgagccgttcgccttcgtggtggtg
gtcaagccgatgaacacgctggcgccggtggtcagccgcaacaccgggcagctcctgtac
gagggtcagtcccgggccctgtccagctcccgcaacctgcagcttagcgacgaagacaac
ctgcacgaggtcaggctcaccgtgctcgacggcctgaggcacggacagctcacggtgctg
ggctcccgccgcaagttcttcaccgccgccgacctggacgcgggcaccgtgctctaccag
cacgacggcagcgacacgtacagcgacaacatcgtgttccgcatgacggacggagcgcac
gacgtcgagttcctcttccccatcaccgtggtgcccaccgacgacgagccgcctgtcgtc
aacgccaataccggcctgagcgtgcccgagcaccaggccgcgcccatttccccgttcgtg
ctcagcgccaccgacgtcgactccgaggactcgaccatccgcttcgcgctcgagccgccc
gtgcccggcctcggggagatggtcctccggcaggtggagccccctgccgacccttcctcc
tggcagtacaccgagagggcgggcgcctacgagaaggtggtgatggagtggtcccagcag
gacatcatgaacggcaggctcttctaccgccatgtgggccctcacagcaccgaggcggtg
atggagcagctggtcttccgtgtgcaggatgacaacgaccccccgaatcagtccggcgag
cacaccttcgtgattaaaatccaaccggtggacgacatcgcccccgagctgtacccgggc
accactttacagatgatcgtggaggagtatcgcctgacccactttcgccggaaattcctt
cgctacaccgacctggattcggacgacagggatctgagatataccattacaaagcccccc
accgacaccgatgagaacaaccccgtgcaaatgggcaacatcgtcttgacagaaagcccc
aacaccctggtgggcgagttcacccaagctcaggtcaaccaccacaaaattgcctaccga
cctcctgatgtggagcttggaattactcctcatgtggttcagtttgagtttacagtggaa
gacacggctggcaatagcgtggatggcaccttcaccatctttctgcagcctgttgacaac
aaaccgcctcaaataaccaacactggctttataatgtttgagagagatacctacataatt
acaagtgccgaactggatgctacagatccggacactgatggaccccagattacatttacg
ctctctcagcttccgaaacatggtcagttgcagtacgctggtgttactataacggaggga
gaagcatttaatttaaatgatataagtaatggcaaaatcgcatatgtgcacaatggtgac
gagtctactggcgattcattgaaaatagatgtgagtgatggagttcatacagttactatc
actgttaaggtaacagtacgtcctgttgatgatgaagtaccaactattacgttgccagtc
ggaactattggatcgtacttagatgtgttggagaatggagccactgaaataacaaccaat
gtcatccaaggaaccgatgaagacacagatgatcttcggctgaccttcattgtggaggac
caaccacagctgggagagatcttggttaatggaatcccctctgaaagttttacacaacaa
gacatcattaatggagttgtgatctatgctcacacagatggtgagataggactgcaaaag
aaagaagattcttttaatctgacgctcactgacatgtctgatgagtggaacattggagga
aacaaggtgcaaggtgtccgtgtacaggtgactgtccttcctgttgacagtcaagctcca
aacgttattgtcggaaagcagtttactgtggttgaaggtgataaaaatacaatatcacag
aaacatttgaaagctgaagattttgatacccccaatgatgatatactctgtactataatt
gtccaaccaacttctggctatgtagagaacatttcaccggctcctgggtctgaaacatct
cgtgccggaactgctatcactgctttcacttttaaggagatccgtcttggacacattaat
tatgttcagagcattcacaaaactgttgaaccagtggaagatagatttacattccgctgc
tctgatggaattaacttctcagagagacacttttttccaattgttataatacctgcaaat
gatgaaaaaccagacattttcatgagagagtttgttgtaatggaaggtatgagccttgtt
attgacactcctattctcaatgctgcagacgctgacatccctgctaacgaattaactttc
tccatcattaaacctccaaagcatggtcagatagtaaatcagcttactacaggtactgtc
cttgtcaacagttttactttaggtcagatcagagaaggttccagcattgtttatgagcat
gatgattccgaaactaaggaagacagctttgacgttcgccttacagatgggaagtacagt
gttgaaaagacagtaatcattatggtcattccagttgatgatgaaactccaagaatgact
gtaaataatggactagaaattgagattggagaaacgaaagtaataaatgataaagttctt
aaagctacagacctggactcagaagacaaaactcttgtgtacattatacgttatggacct
agtcaaggtctcttgcaacaacttgtaccatcagggaaatttaaaaacattacagtagga
atgaacttcacccaggatgatattgacaagaatttgattcattatacacatactggccag
gaaggtatccgcgacctcatcaagtttgatgtaactgacggcgttaatccactcatcgat
cgttacttttatgtgtctattggtggtattgatatgatctttcctgatgtggtcagtaaa
ggtgtctctctaaaagaaggtggaagagtaactcttacaacagatttactcagtaccact
gatctgaatagtcctgatgaaaatcttcttttcagtattacgcgagcacctgttcgcggt
cacctggaatgcacagatgaacctggggtacctgtcacaacattctctcagcttcagtta
gctggaaacaaaatctactatattcacacgtctgatgatgaagtgaaaatggacagtttt
gaatttgaagtcacagatggatacaaccctgtgtttcgtactttcagaatctctatcagt
gatgttgacaacaaaaaacctgtccttactttccatgacttgatggtgaatgaaggagac
gtaaaactaattactccatttgaactgactgttgaagacagagacacacctgatcacttg
ctgcggtttactgtgacacaagttccagttcatggacagctgctatttaaccgcactata
tctattacatcttttaccaagcaggacttgaatgaaaacctcatcagttacaagcatgac
gggacggaattttctgaagatagtttttctttcacagtgactgatggcacgcatactgac
ttctacgtcttccctgacaccgtctttgaaacgcgaaaatcacagatgatgagaatacga
acaatgcccattgacaatggagtgcctcagattattgtgaataaaggtgcccccaccctt
cgcgggctcaccacaggacaccttgggtttatgattaccagcaaagcattaaaagctgaa
gaccgtgatagtgtacacagtgctttgagattcaagattctggaaggtcctgaacacggg
tatcttatccacatgggcaaaggaaatgagagtgtaactggatttactcaaggggaaatc
gataacatgaagatctgttatgtgttgaaggaagggcacaatgcgacaagtgatgtattc
cacttctcagtcgaagacagtggtggtaataagttgaagaatcaacttttccgtttgaac
tgggcttggatctctctagaaaaggagtactacctcatagatgagaattcaaaattcctg
gaggttacattaaagcgcagaggttatctgggagaaacctcgtttgttggcattggtaca
aaagatggcacagctgagaaggataaggatttcagaggaaaatcccaaaaacaggtgcag
ttcaatccaggtcaaaccacagcgtcttggagagtacggattttgacagataacgaatat
gaacagtctgaaacattccagattgtactttctgagcctgtcatggctgttctcgaattc
ccagagattgcaacagtggagattgtagacccgggtgatgagtcgacggtcttcatcccc
aaatcttcctattccattgatgaagatattggtgagctgttgattccagtaatgaggaca
ggagatacgagtcaggaactgatggttatctgttccacacatcaaggcagtgcgactggc
actattccatcaagtgtgctgtcttactcagactacatcactcgagcagaggatcaccac
agcgtcattcgttttgacaaggatgaaacggagaaattatgccatgtagtcatcattgat
gattctctgtatgaaaataaggagacctttaacgtcacactgagtatggccatggggggc
aaaataggagtacacccatcgactcagattatcatcctcccagatgtgaatgatgaacca
gttttttattttggagacactgagtaccaggtagatgaaagtgaaggctacgtggaagtc
caggtctggcgaactggaacagatttatctaagacggcaactgtaactattcgatcgcgt
aaaacagaaccagcatcagctgaagctggcatcgattatgtgggcatcagccgcaacctg
gattttgcccccggagtgaacatgcagactttccgtgttacaatccttgacgatttaggt
caaccagctctagaaggaccagagagatttgaacttgtgctgcgtatgccagtgaatgct
gtccttggagaacccagtaaaaccaccgtgcttattaatgactcagtgtcagatttgcct
aaggtacagttcaaggatgcagcatacgtgggcaaagagaatgatggtcagatcacagca
attgtttaccgcagtggggacaccagctacaaatccacagttcggtgctacactcgccaa
gcatctgctcaggtcatgatggattttgctgagcgtcccaacacagatgattccatcatt
acatttcttccaggcgaaattgagaaaccctgcactgtgactttaaatgatgatacaata
cacgaggaagatgaggatctgagattggtgcttggaactccaaagagcgagtccccattt
ggtgcttcaattggggaaaagaatgaaacagtgataaaaatcaaggacggcgcagacaag
gctattattaaatttggagagaccaaattcagtatcagtgaacctaaagaacccgggcag
attgctgttgtaaaaattccagtacttcgccttggagacacttcaaaagtttctattgta
cgagtccacacaaaagatggttctgcaatctcaggagaagactaccatcccctatcagaa
gaaattgaatttaaagaaagtgaaactgagcactttgtggaagttgaggtgctgtatgac
ggagtgagagaaatgcgagaggccttcactgtccatttgaaacctgatgagaacatggtg
gcagaaactcagataaacaaagcaattatatacatcgaagagatgaatagcatggctgat
gtcacattcccgtctgtcccacaagttgtctcgctgcttatatatgatgacacatccaga
gcaacagaaacccctagcccgctagcaggttatcctgttgtctgtgttacggcatgcaat
cctaaatattccgattatgacaagacaggctcaatatgtaccagtgagaacatcaacgat
acccttactcattaccgttggttggtgagtgccccgactggccctgatggagtgactagc
cctatgagagaagtagactcaaatacattcttcacctcatccaagatgattactctggac
tccatctacttccaagctggttcccgggtgcagtgcgctgctcgagcagttaattccaat
ggggatgaagggcttgaattaatgagccccattgtatcaatcaacattgaggaaggtctg
tgccagcccagagtacaaggagcagtcggtgctgagcctttctctgctaagctccgttac
acgggatccgaagatccagatcatcccaaccttataaaagtgactgtaacaatgcctcac
attgatggtatgctccctgttatctccacacgccagctgtctaactttgaactcactctc
agccctgacggcactcgagttggcaaccacaaatgttctaacttgctggactacaatgaa
gtgaagacgcgttatggctttttgtcagattccactaaaaaccccgaggtgattggagaa
accgctccataccagtatagctcatctctgcgtggatcttctacactgcggttctaccga
aacctcaaccttgaagcttgtctctgggagtttgagagtttctatgatatgtctgagctg
ctcacggactgtggaggcactattgggactgatggccaggttttaaacctcgtgcagtcc
tatgtaactctgcgggtgcctctttatgtctcctatgttttccattccccggtgggtgtc
ggtggctggcagcactttgacctgcaatcggagcttcgtttgacttttgtatacgacact
gccatcttgtggagggatggaattggcagcccaccagaggctgaactgcaaggtgctctt
tacccaaccagcatgaggatcaacagtgaaggacgcttggtagtgaacttccgtacagat
gcacgattccagggcctctttgttatgtcacatgctgcgtcaccacttagctccatggtt
atgtcagctgatcatccgggattgacctttaccctcagtttagtacggactgagccaacg
tacaatcatcctgagcaacagtggagcttcacttcagattttgctgtccgtgattattca
ggaacatacactgtgaagcttattccttgtgtctctgctccaagccaggagtataccatc
ccaattgtgtgcaatccaagggagccaataacctttgaccttgacatcaggtttcagcag
gtgagtgatccagttgctgctgagttcagcctgaatactcaaatgttcctgttaaatagg
aggggtctctggctgtctgatggctctatgggatttggagaaggcagtgatgtcgctttc
acagaaggatcagttgtctatggacgtgtgatggttgatcctgtgcagaacctgggagac
tctttccattgtagtattgagaaggtgtttctgtgtacaggagctgatggttatgtgccc
aagtacgacccaataaatagtgaatatggctgcctggctgactcatcttctctcttgtac
aggttcaaaatcctggataaagctcagcctgagacgcaggatccatattttggaaatgtc
gcattcaatgctaaacttgcaatagatgatcctgaagcaattgcactttccagacaacct
ggatctgatggctttcgaatagactcctccccactcttccaggtggctgctggtcgtgag
tggtatattcatgccatttacactgtgcggtctagggacactgctagcagaggcattgga
aagagaagtgtggaacatcatattctttcacattctggaagtgtgagctctgtggggcat
tcacgccaacggcgatcagttaaagaaacccccgtactggctgaggacatcggcatcgag
aacaacagaggaaccaacattcaacatattgccttagaccgcagcaacaggaagaaggtt
gtcgaggaagagatccaccctgaaggagctgttgctaggtcaccaaatgaccgaggtgac
aaaattggcaatgttcccattattggaggcattgcagccttaatactagctatttgtgtc
gtcattatcattgtcgtcctattgaagcgcagaaagcaatcagacaagggagcgtacaag
aaatcatgcagaatccagaccatgactgcacagaattatcacagcgacagttctgaggtg
tga
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integrated database retrieval system
