Rhincodon typus (whale shark): 109917286
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Entry
109917286 CDS
T06055
Symbol
lman1
Name
(RefSeq) protein ERGIC-53
KO
K10080
lectin, mannose-binding 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109917286 (lman1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109917286 (lman1)
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
rtp04091
]
109917286 (lman1)
Membrane trafficking [BR:
rtp04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
109917286 (lman1)
Lectins [BR:
rtp04091
]
L-type lectins
109917286 (lman1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lectin_leg-like
Bact_lectin
IMD
Lectin_legB
Golgin_A5
DUF5344
Motif
Other DBs
NCBI-GeneID:
109917286
NCBI-ProteinID:
XP_020372670
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All DBs
Position
1:complement(37289258..37352576)
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AA seq
490 aa
AA seq
DB search
MAALVTVTGSLLVLAVSGAAAAAEMPSRRFEYKYSFKGPHLVHGDGSIPFWVHTGNAIPS
ADQIRITPSLKSQKGSVWTKSKFSFENWEIEVTFRVTGRGRVGADGLAIWYTVDQGLDGP
VFGAADSWNGVGIFFDSFDNDGKKNNPVVLVVGNNGQYLYDHQNDGAAQALGSCLRDFRN
KPYPVRARIIYYKKTLTVMLHNGFTPNNDDYELCARVENMMLPPEGYFGISAATGGLADD
HDVLSFLTFRLLEPGKPVEPADSTIPQEEKEKYREEYENFQQELDKKKEEFQKDHPDMQG
EAADLFETVNERELRQIFEGQNRIHLEIKQLNKQLDMILDEQRRYVSLVTEEMAKRGTNT
APQAGQLPPGELDNIMRYQQEVLRHVGELKNSVTNALNQAAQLPGGATGSYETIQHFHEI
KENLHTVKRDLAALVQRNLNAEKPKCPELPPFPSCLSTTHFFMFVAVQTVLFIGYIMYRS
QQEAAAKKFF
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggtgacagttaccggcagcttgctcgtgctggccgtcagcggtgccgcg
gcggccgccgagatgcccagccgacgattcgagtacaagtacagcttcaaggggccgcac
ctggtgcacggcgacggcagtatccccttttgggtacacacgggcaatgcaataccaagt
gctgatcaaatccgtataacaccatcactgaaaagtcagaagggatctgtttggacaaaa
agcaaatttagctttgaaaactgggaaattgaagttactttccgtgtgacagggagagga
cgggtcggagctgatggtttggcaatctggtacacagtagatcaaggattagatggccca
gtttttggagcagctgattcatggaatggtgttggtattttctttgactcctttgacaat
gatggaaagaagaataacccggtagtacttgttgttggaaacaatgggcaatatctctat
gatcatcaaaatgatggtgcagcacaagcattgggctcttgtctgagagactttagaaac
aagccttatcctgtaagagctagaattatctactacaaaaaaacacttacggttatgcta
cataatggctttactccaaataatgatgattatgagctttgtgctagagtagaaaatatg
atgcttccacccgagggttattttggaatctctgcagcgactggaggtcttgcagatgat
catgatgtcttgtcctttctgacattcagacttttggaacctggcaaaccagtggagcct
gctgattcaacaattccccaagaagaaaaagagaaatatcgagaggaatatgaaaatttc
caacaagaacttgataaaaaaaaagaagaatttcaaaaagatcatcctgatatgcaagga
gaagcagctgacttatttgaaactgtaaatgagcgagaattgagacaaatctttgaaggt
cagaatcgcatccaccttgaaatcaaacagttaaacaaacaactcgacatgattctggat
gaacaaaggaggtatgtctccttagtgacggaggaaatggcaaagagggggactaataca
gcaccacaagcaggacagctccctccaggcgagcttgacaatattatgagataccagcaa
gaggtgcttaggcatgttggtgaattgaagaattctgtaactaatgccctgaaccaagca
gctcagcttccaggtggtgcaacaggaagctatgaaacaattcaacatttccatgaaata
aaagaaaaccttcatactgttaaacgagatcttgctgcattagtacagagaaatctaaac
gccgaaaagcctaaatgcccagaattgcccccattcccatcatgtttgtccacaactcat
ttcttcatgtttgtggcagttcaaaccgtgttgtttattggttatatcatgtatcggagc
cagcaggaagcagccgcaaagaagttcttttga
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