Rhincodon typus (whale shark): 109917531
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Entry
109917531 CDS
T06055
Symbol
mnat1
Name
(RefSeq) CDK-activating kinase assembly factor MAT1 isoform X1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03022
Basal transcription factors
rtp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109917531 (mnat1)
09124 Replication and repair
03420 Nucleotide excision repair
109917531 (mnat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109917531 (mnat1)
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109917531 (mnat1)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109917531 (mnat1)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109917531 (mnat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-RING_UBOX
TRAF3_RING
zf-C3HC4
DZR_2
zf-RING_2
zf-UDP
HMBD
Motif
Other DBs
NCBI-GeneID:
109917531
NCBI-ProteinID:
XP_048456329
LinkDB
All DBs
Position
8:27226293..27366902
Genome browser
AA seq
309 aa
AA seq
DB search
MDDQRCPRCKTTKYRNPSLKLMVNVCGHTLCESCVELLFVRGSGNCQECGTALRKNNFRV
QLFEDPTVDKEVEIRKKVLKIYNKREEDFCTLKEYNDFLEEVEDIVNNLTNNIDVENTKR
KMEQYQKDNKDIIYRNKLKLSREQEDLEEALEFERQESDQRRMLLLKEEQMQQLAKKKNK
KALIDDLESSQLPASMLLAQHKDRAAQLETQLEAQRQVRSVTFSTGIKMGQQISLQPMPR
IEEALYVYQPLQIETYGPKVPEYELLGKQGYLNHVRTATSQDLAGGYTSSLACYRALQDA
FSGLFWQSS
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcagagatgtcctcgctgtaaaaccacgaaataccgcaacccttcgctgaaa
ctgatggtgaacgtgtgcggacatacattatgtgagagttgtgtagaacttctgtttgta
agaggctctggaaactgtcaggagtgtggcacagcactacgaaaaaacaacttcagagtg
caactctttgaagatcctacagtggacaaggaggtagagattcgaaagaaagtattaaaa
atatacaacaaaagagaagaagacttttgtactctcaaagaatacaatgattttcttgaa
gaagttgaagatattgtgaataatttgaccaacaatatcgatgtagagaacactaaaaga
aaaatggagcagtaccagaaggataataaagatattatttacagaaacaagctaaaactg
agccgggagcaggaagacttagaagaagctttagaatttgaacggcaggagagtgatcaa
agacgaatgctccttctgaaggaagaacaaatgcaacagttggccaaaaagaaaaataaa
aaggccctgattgatgacctggaaagctcccagttgcctgcaagcatgcttttggctcag
cataaagaccgggctgcacaactggaaacacagttggaagcacagcggcaagtcagatct
gtcacattctcaactggcattaaaatgggtcaacagatatccttacagccaatgccaagg
atagaagaagcactgtatgtttaccagcctttgcaaatagagacttacggacctaaagtg
ccagaatatgagttgcttggaaaacaagggtacctgaaccatgtccgtactgctacatcc
caggatcttgctggaggctacacctcttcacttgcatgttatcgtgccctgcaagatgca
tttagtggacttttctggcagtcaagctag
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