Rhincodon typus (whale shark): 109917766
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Entry
109917766 CDS
T06055
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109917766
04121 Ubiquitin system [BR:
rtp04121
]
109917766
Transcription factors [BR:
rtp03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
109917766
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
109917766
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
ZBED1_RNase-like
ZBED1_RNase-like_helical
zf-BED
FAM200-ZBED5_RNase-like
DUF4371
Motif
Other DBs
NCBI-GeneID:
109917766
NCBI-ProteinID:
XP_048462358
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All DBs
Position
16:54254742..54313822
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AA seq
658 aa
AA seq
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MEGDSDIVHCGSSFVKIERPQLVEKSNTTSEVWRYFGFQPGSDGRPENIETPVCKICFRV
IPAKASNTSNLYAHLKSQHPHIYIEVKGKPNQAPPTTTPSSGEPGREQAATMREIFQRKD
KFDPKPREHRELTKAVTYYVTKDRMPLSTISKPGFQHLLSKFNPRYELPSKNYFSRVAIP
SLYADVRKVVEKELKSGDCFAATVETWTSRNNEMYMTCGVQYVDNDWILKNHCLQTQYLP
DEHTGQSLKCAVEDVLEEWGLDPTNLVAITTDNGPAIKHACELLGWKRITCFSQNLQCSL
QKGLEDSRIERIIQLSRQIFSQFSRSWRRKRDFSIAQSQKGLPRNSLKADVSNHWGTTLN
MLERFLEQQDAVRAVLAHDHKICRLVPTWQDIDVLESIISVLRPFREMTEALSSEKFISI
SAINPLIKHICNDLVREEQEELTLSFLMKMRIKRDLEMRYGDPELVHFLEKVTFIDPRFG
PTCVDNLENVLQQIKGEVLAGKISEESSLFQIGFDGSTVSPLSSCSWYDRESPGPSQPKK
AKYGGGLAKVFGKQSGDGGADKMVTTSVSLQEQLDRELDFYFKEPKLSLESCPLQWWKAT
QNCLPLLAKLAKKYLCISAMNVASERAFSNSSYALTEYRSNVKPKHMDQLVFLAENLP
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggaaggggacagtgacattgtacattgtggatcatcatttgtgaaaattgaaaggcct
caacttgtggagaaaagcaacaccacatcagaagtgtggagatactttggcttccaacct
gggagtgatggtagaccagaaaacattgaaactccagtctgcaaaatctgtttccgtgtc
attccagcaaaggcttcaaacacaagtaatctttatgcccatctgaaatcgcagcaccct
catatttatatagaagtgaagggaaaacctaaccaggcaccaccaaccactacaccttca
tctggggagccagggagggaacaggcggccaccatgcgggagatttttcagcgaaaggat
aaatttgatccaaagcccagggagcacagggagctgaccaaggctgtgacttactacgtc
accaaggataggatgcccctgagtaccatttctaaacctggctttcagcacctcttgagc
aagttcaacccgaggtatgagctaccaagcaagaactacttttcaagagtagctattccc
tcgctttatgcagatgttcgcaaagttgttgagaaagagttaaagagcggggattgtttt
gctgcaactgttgaaacttggacaagtagaaacaatgaaatgtacatgacatgtggggtt
caatatgtagacaatgattggatcctcaaaaaccattgtctgcagactcagtatttacca
gatgaacacactggacagagtttaaagtgtgccgttgaagatgtgttggaggagtggggg
ctagacccaaccaaccttgtagccatcactactgacaatggacctgctattaaacatgcc
tgtgagttgctgggctggaagagaataacttgcttcagccagaacctacagtgttctctc
caaaagggtcttgaggattcccgcattgaacgaatcatacagttgtcccgtcaaatattt
tctcaattttcacgcagttggaggaggaagcgggatttttctatagctcagagtcagaaa
ggccttccaaggaattcactgaaagcggatgtcagcaaccactgggggaccactttgaat
atgttggaaagatttcttgagcagcaggatgctgtcagagctgtgttagctcatgaccat
aaaatatgtcgtcttgttccaacatggcaggacattgatgttctcgagtcaattataagt
gttttgcgtccttttcgtgaaatgactgaagcgctgtcttctgaaaaattcatttccatt
tcagcaatcaatcctcttataaagcacatttgcaatgatctcgtgagagaggaacaagag
gagttgactcttagttttctcatgaaaatgcgaatcaagcgagaccttgaaatgcgatat
ggagacccagaattggttcattttctggagaaagttacattcattgatccccgtttcggt
cccacttgcgtagacaatctggaaaatgtcctgcagcaaattaaaggagaagtgcttgct
ggaaaaatatctgaagagtcatcattgtttcaaatcggctttgatggctcaactgtttct
ccgttgagctcttgcagctggtatgatcgagagagcccagggccgagtcagccaaagaag
gccaaatatggtggaggacttgccaaggtgtttggaaagcagagtggagatggaggtgca
gacaaaatggtgacgacttctgtgtcgctgcaagaacagcttgaccgagaactggatttt
tatttcaaggagcctaaactctctctggagagctgtcctcttcagtggtggaaagctact
cagaattgtctgcctttattggcaaagttagccaaaaagtatctctgcatttctgcaatg
aatgtagcatcagagagagcatttagcaatagtagttatgcacttactgagtatcgaagc
aacgtgaagccaaagcatatggaccagctagtgttcttagctgaaaatctcccatga
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