Rhincodon typus (whale shark): 109917899
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Entry
109917899 CDS
T06055
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtp00536
]
109917899
Glycosaminoglycan binding proteins [BR:
rtp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109917899
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109917899
NCBI-ProteinID:
XP_048459377
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All DBs
Position
1:103528163..104148164
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AA seq
659 aa
AA seq
DB search
MPKMSAERNPKRSGLKQQVEGLGLSQTGRCCWSLANVLWLLLSASSLAFCVSLSVKTSQL
EERILHLENGKGDTLPYRSPSSEADRMRLLTQDRVEQLLSQRSYEDAGKRRIAREAPTAC
NCPAGPPGKRGRRGRNGEPGPPGPPGPKGEKGDQGDQGPRMAFPYPRVNHGFLSADQQFI
KRRLMKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGMPGAPGEIGPRGETGFMGPQ
GPPGQKGSIGVTGVPGFHGQKGDSGKDGDPGPKGEIGDRGEKGDVGKPGLKGDKGVKGEA
GFWGPQGEPGLPGLPGTKGEKGDGGPPGRGEIGQPGPSGPKGEPGELGMPGRYGAKGDRG
DPGDSGPMGPRGPPGQKGEQGVTEIIDYNGNIHQALQRITTLTVTGPPGPQGSPGMPGPK
GDMGNPGLPGAEGRQGPKGSKGDTGVAGDKGSIGLPGLPGVNGEKGEKGEKGDHGPSGPK
GASIVGPPGPTGSQGPPGPMGPHGLPGPKGEPGLNGVKGGKGEPGQKGDRGPLGLPGASG
LDGQPGLRGLDGPMGPAGPAGPKGDRGEKGAVGNPGLRGPTGLPGIDGDPGLDGFSGPKG
DRGERGEKGLRGNKGEKGEPGQPGLDGLDAPCQLVQYSFSYQPCMMSLMRQSVIMQSSG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagatgtcggcggagcgcaatccgaagcggagtgggctgaagcagcaggttgag
ggtttaggactgagccagaccggccgctgctgctggagcctggcgaacgtgctctggctt
ctgctgtccgcctcttcgctcgcgttttgtgtcagcctcagtgtgaagacatcccagctg
gaggagaggatcctgcacctggagaatggcaaaggagacactctgccttaccgtagcccc
agctcagaggcagatcggatgcggctgctcacccaggacagagtggagcaacttctgagc
cagagatcctacgaagacgcagggaaacgcagaattgcaagggaagcaccgactgcatgc
aactgcccagcaggtcctccgggaaagcgaggtagaagaggtaggaatggagaacccgga
cctcctggtccacctggtccaaaaggtgaaaagggtgatcagggagaccaggggccacgg
atggcgtttccttacccaagagtcaatcatgggttcctgtcggctgatcagcagtttatt
aagcgacgtctcatgaagggtgatcaaggtcaagctgggccacctggcccaccgggacct
cctggtcctccaggcccacgtggtcctccaggtgacacaggaaaggatggtcctcgggga
atgccaggagcacctggggaaattggaccaagaggtgaaactggattcatgggaccccag
ggaccaccaggacaaaagggttcaataggagtcactggtgttccaggcttccacggacaa
aagggtgattctgggaaggatggtgatccaggccccaagggtgagattggagatcgtggc
gaaaagggtgatgttgggaaaccaggactaaaaggtgacaaaggagtaaagggtgaagca
ggattttggggacctcagggagaacccgggctgcctgggttaccaggaacaaagggagag
aaaggagatggagggccaccaggaagaggtgaaataggccagcctggaccttcaggccca
aagggggagccaggtgaactggggatgccaggccgttatggagcaaagggtgaccgtgga
gaccctggggattcagggccaatgggacccagagggccacctgggcagaaaggagaacaa
ggggtaactgagataatagactacaacggcaatatccatcaagcactccagaggatcacc
accttaacagtgacgggaccaccagggcctcaaggatctccaggaatgccaggaccaaag
ggagacatgggtaatcctgggcttcctggagctgagggaagacagggtcctaaaggttca
aaaggtgacactggtgttgcaggagataaaggaagcattggtttacctggattacctggt
gttaatggagaaaagggagagaaaggagagaaaggagaccatgggccatctggtccaaaa
ggcgcttcaattgtaggacccccaggacccactggctcacaaggcccaccgggtccaatg
gggccacacggacttccaggacctaagggtgaaccggggttgaatggtgttaaaggaggg
aagggtgaaccaggtcaaaaaggtgacagaggaccccttggtctcccaggtgcatctggc
ttagatggacagccaggactgcggggtctggatggtccaatgggtcctgcggggccagct
ggcccaaagggagataggggtgaaaaaggtgcagttggtaacccaggcctaaggggaccc
acaggtttgcctggaattgatggagatccagggttagatggtttctctggtcctaaagga
gatagaggagaaaggggagaaaagggtctccgaggcaataagggggaaaaaggggagcca
ggtcaacctggcctggatgggctggatgccccttgccaattggtacagtattctttttcc
taccaaccctgcatgatgtctttaatgaggcaatcagtcataatgcaaagcagtggttga
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