Rhincodon typus (whale shark): 109918041
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Entry
109918041 CDS
T06055
Name
(RefSeq) embryonic polyadenylate-binding protein A-like
KO
K13126
polyadenylate-binding protein
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03015
mRNA surveillance pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109918041
09123 Folding, sorting and degradation
03018 RNA degradation
109918041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109918041
03041 Spliceosome [BR:
rtp03041
]
109918041
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109918041
mRNA cycle factors
Stress granule specific factors
109918041
Spliceosome [BR:
rtp03041
]
Complex C
Other components
Complex C specific factors
109918041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
109918041
NCBI-ProteinID:
XP_048464429
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All DBs
Position
19:4186015..4223003
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AA seq
558 aa
AA seq
DB search
MNFEVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDESIDNKALYDTFSAFGNILSCKVV
SDESGSKGYGFVHFETQEAATHAIETMNGMLLNDRKVFVGHFKSHKEREAEFGSKVLEYT
NLYIKNFGEDMNTARLREIFNAFGKTLSVRVMTDERGRSKGFGFVNFEKHEDARKAVAEM
NGKEINSRAVYVGRAQKKTERQSELKHRFELMKQERNSRYQGVNLYVKNLDDGIDDECLR
KEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK
EERKAHLTNQYMQRLANMRAIPNPLLSSFQHLAHSGYFMPTVPQVQNRTPYYASSPVTPM
RPSQRWAGQPIRPPTPYQSMLPSVRGTAPRRVATAISTVRQASTQVPQLPSNTQRVATIG
TQTAGPRTVLSGPMVRVLPQYKYTSGVCNTQHSPSAQQVSEPAVHVHGQMPLSASVLAAA
LPQEQKQMLGERLYPLIQEMHPTLAGKITGMLLEIDNSELLHMLESQDSLRSKVEEAVAV
LQAHQAKDTVPKKGSTAA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgaggtgattaagggccgccctgtacgtatcatgtggtctcagcgggatcct
tctctgcgtaaatcgggagtggggaacattttcatcaaaaacctggatgagtccattgac
aacaaggctttgtacgataccttctctgctttcgggaacattctgtcctgcaaggttgtc
agtgatgagagcggatcaaaaggatatggttttgtacactttgaaacacaggaggctgct
acccatgcaattgagacgatgaatggaatgttactgaacgatcgaaaagtgtttgtaggt
cacttcaaatcccataaagaacgagaagctgaatttggaagtaaagttttggaatacacc
aacctttatatcaagaattttggagaagatatgaatactgccagactgagagagatcttc
aatgcattcggaaagacgctgagtgttcgggtgatgacagatgagagaggtcggtccaag
ggatttggctttgttaactttgaaaagcatgaagatgctcgcaaggcagtggctgaaatg
aacgggaaagagatcaatagtcgggctgtgtatgttggccgtgctcagaagaagacggag
cgacagagcgagctgaaacataggtttgagttaatgaagcaagagagaaacagccgttat
cagggagtgaacttgtatgtgaagaatctggatgatgggattgatgacgagtgtttgagg
aaggaattctctccatatggaacaatcaccagtgcaaaggtgatgactgagggaggccac
agcaaaggctttgggtttgtctgtttctcttcacccgaagaagcaacaaaagccgtcaca
gagatgaatgggcggattgtcagcaccaagcccctgtacgtagccttggctcagcgcaag
gaggaacgcaaagcacatttgaccaaccagtacatgcagcgactggcgaacatgcgagct
atacccaaccccttgctcagctcgtttcaacacctggcacactctgggtactttatgcca
actgtgccgcaggttcaaaatcgaactccatattatgcctcatctccagtgaccccaatg
cgaccttctcaacgttgggcaggccagccgattagacctccgaccccttaccagagcatg
ctgccctcggtcagagggactgcacctcgacgagtggccacagctatcagtactgtccga
caagcatctacccaggttccccagctcccatccaacacgcagagagtggccactataggg
actcagacagctggaccacgtactgtcctttctgggcccatggtgagggtactgccccag
tacaaatacacatctggagtctgtaacacccagcactctcccagtgcacagcaggtgtct
gagccagccgttcacgttcatggtcagatgcctctcagtgcctcagtgttggctgctgca
ttgccacaggaacagaaacagatgctgggtgagcgcctatatccgctgatccaggaaatg
catccaacactggctggcaaaattaccggaatgctactggagatcgataactcggaactc
ctgcacatgttagaatcacaagactcccttcgctccaaggtggaggaagctgttgctgtg
cttcaggctcatcaagctaaagatacagtgccgaagaaagggagcacagctgcctga
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