Rhincodon typus (whale shark): 109918225
Help
Entry
109918225 CDS
T06055
Name
(RefSeq) thrombospondin type-1 domain-containing protein 4-like
KO
K23377
thrombospondin type-1 domain-containing protein 4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
109918225
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
109918225
Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
Thrombospondin domain-containing proteins
ADAMTS-like proteins
109918225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP1_ADAMTS
TSP_1
ADAMTS_spacer1
ADAMTS_CR_3
TSP1_spondin
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
109918225
NCBI-ProteinID:
XP_048466547
LinkDB
All DBs
Position
1:complement(162738480..163134690)
Genome browser
AA seq
962 aa
AA seq
DB search
MLRTPEWLIRLVVTSAIFSLQLGTGLVSVNASISVQSRVKRQTADSFTEEQAKGSWGRWG
PWSSCTRTCGGGVMQQTRPCLPRIKQRTQPTFQFATGDQSLRAFHIPLGRVLSSVRQSYP
LHRSPAYKLTGASINQIYQISNREPLNTLRARTLQAEGSVQNTPSQQRTDPDQVNIDESS
DHLHLNHKQTSKPMVRPGHWSQLPLHQTEESTLRNVKVSQLFQTPLETKVQTDKHSSTEQ
VLGLQKRHLSRVSRSPPAQEFNCLGDFRQYKLCNSQPCPRGSRDFREVQCAAYNNRAFTG
KHYEWEPFTDVSDNQKCELNCRAIGYKFYVRHATQVIDGTPCEPGSLNICVNGECKKVGC
DEVLGSNKVMDKCGVCGGNNTTCKVISGIFKQTIMSVGYHKILEIPEGATRINVTEMTKS
RNYLALRSHFGHPIINGNWAIDRPGTYEAAGTLFKYKRPNEISTTAGESLIAEGPTSEIL
DVYMIYQQANPKVQYEYVLPTDNVVNSHSLAHTADEHLGEAFNGQLSYGADGDVYVLRER
EAENFVSGVHANQLQSRKYQTSPGEVLHSWGEGPRKKREFNWKQIGSSECTVSCGTGSRA
LIFKCVNRNTHEEVSDNLCETAMRPTPDEEACNIQPCPAYWDLGEWSECSKTCGPGIQHR
QVLCRQVYANRTTTVQPERCQHLEKPETTTTCQLKICSEWHIRTEWSECSVPCGVGQRIR
DVKCIDNLGDIVDDEECNMQLKPADTENCDMGPCAKSWFHTDWSVRCSAECGPGIQTRSV
VCLMNHISSLPLEGCGVEKPEDVRPCNVGPCNEDVRWFTGPWSQCSAECGNGTQIRSVVC
LKKTDDKLTVAETSECSHLERPASERSCHLRKCDVKWYSTEWSACSKSCESGYRVREVRC
LADDMTQSNSCDSFLRPIDKEVCNTNPCIPEIVYHKSPQHHSASLLLVGYIVRKDVELLL
IH
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgttacgcacaccagaatggttgatcaggttggttgtaaccagtgccattttcagctta
caattgggaactgggctggtttccgtaaatgcaagcatatcggtacagagccgagtgaag
cgccagactgcggacagcttcacagaggaacaggctaaaggttcctggggtagatggggc
ccgtggtcttcctgcaccaggacgtgtggcggaggagtaatgcaacagacacggccctgc
cttcctcgaataaagcagagaactcagccgacattccagtttgcgacaggcgatcagtcc
ctgcgagcatttcacattcccctcggccgagtgctatccagcgttcgccagtcataccca
ctccatcggagcccagcctacaagctaacaggagccagcattaaccagatttatcagatc
tccaacagggagccattgaatacactgagagccaggacattacaggcagaaggttctgtt
cagaacaccccctctcagcaacgcactgatccagaccaagtaaatatcgatgagtcttca
gaccatttgcatctgaatcacaagcagacaagtaaaccaatggtgcggccaggtcattgg
agtcagctcccactgcatcaaactgaggaatcaactctgaggaacgtgaaggtgtcacaa
cttttccagacaccattagaaaccaaagttcaaactgataaacacagctcaacagaacaa
gtgttaggattgcaaaagagacacctatccagagtttcaaggagtcctcctgctcaggaa
tttaattgccttggagatttcagacaatacaagttgtgtaactctcagccctgcccccgt
gggagtcgagactttcgggaagttcaatgtgctgcttataataacagagcttttacagga
aagcattatgaatgggagccttttactgatgtatcagacaaccaaaaatgtgagctgaat
tgcagagccattggttacaagttctacgtgcgccatgccactcaagtcatagatggaaca
ccgtgcgaacctggatctttgaatatttgtgtcaacggagagtgcaagaaagtcggttgt
gatgaggtattgggctccaacaaagtgatggacaaatgtggtgtttgtggcggtaacaac
accacatgcaaagtgatatctggaatcttcaagcaaaccatcatgtcggtggggtatcac
aagattcttgaaattcctgaaggagctacacgaattaatgtcaccgagatgacgaaaagc
agaaattatctggctctgagaagtcactttggccaccccatcattaatggaaactgggct
atagataggccaggcacttacgaagcagcaggaaccctgttcaagtataagaggccaaat
gaaattagtacgacagcaggggaatccttgattgccgaggggccaaccagtgaaattctg
gatgtctacatgatatatcaacaggcaaatcctaaggtgcagtatgaatatgttttacca
actgataacgttgtcaacagccattcactagcccatacagcagatgaacacttaggagag
gcctttaatggtcagttgtcatatggtgccgatggtgacgtgtacgttctccgtgaaaga
gaggcggaaaactttgtcagtggagtccatgcaaaccaactgcagtccagaaagtaccaa
acgagccctggagaagtgttacactcctggggagaggggccaaggaaaaagagggaattc
aattggaaacaaattggaagcagtgaatgcaccgtgtcgtgtggaactggaagccgtgct
cttattttcaaatgtgttaacaggaatacacatgaagaagtatctgataacctgtgtgaa
actgcaatgagaccaacaccagatgaagaagcctgtaatatccagccgtgcccagcctac
tgggacctgggagaatggtcagaatgcagtaagacgtgtggacctggaatacaacatcgg
caggtgctttgtagacaagtttatgccaaccggactaccacggttcaacctgagcgatgc
cagcacctggagaaacctgaaacaaccacgacctgccaactgaaaatctgcagtgagtgg
catatcaggacagaatggagtgagtgctcagtaccttgtggtgtgggacaaaggatccgg
gatgtaaaatgcattgacaatctcggtgatatcgttgacgatgaagagtgcaacatgcaa
ctgaagcccgctgatacagaaaattgtgacatgggcccatgtgcaaagagctggttccac
acagactggagtgtcaggtgttctgcagagtgtggcccaggcatccagacgagatcagtt
gtatgtctgatgaatcacatcagcagcttacctctagaaggctgtggggttgagaagcct
gaggatgtacgaccttgcaatgttggtccttgcaatgaggatgtcaggtggttcacagga
ccatggagccagtgctcagcagagtgtggcaatggaacccaaattcgaagtgtggtctgc
ctgaaaaaaactgacgacaaacttacggtggcagagacgagtgaatgctcccacctggag
agaccagcatcggagcgaagctgtcacctgaggaaatgtgatgtcaaatggtactcgaca
gagtggagcgcatgctcgaaatcctgcgaaagtggctatcgggttcgagaggtcagatgt
cttgcagatgacatgacacaaagcaacagttgtgattccttcctaaggccaattgataaa
gaagtctgcaacactaacccatgcatacccgagatagtttaccacaagagcccacaacat
cattctgcatccttactgttggtcgggtatatagtcaggaaagatgtggaactgctgctg
attcattga
DBGET
integrated database retrieval system
