Rhincodon typus (whale shark): 109918402
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Entry
109918402 CDS
T06055
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109918402 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109918402 (skiv2l)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109918402 (skiv2l)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109918402 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
109918402 (skiv2l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DnaG_DnaB_bind
DUF2666
Ski2_beta-barrel
Motif
Other DBs
NCBI-GeneID:
109918402
NCBI-ProteinID:
XP_020373916
LinkDB
All DBs
Position
35:complement(19434039..19479703)
Genome browser
AA seq
1247 aa
AA seq
DB search
MEQERIEVPPKHPDDLPLSILEVGCSGKFELITEPAKKNGYIFPLATLPHGLPPFALDLI
TEAEQRFLSDPSLLPLHHFENSQKVWPREVCVDSLYHVDITPVHSTLKVERNQTTGELLG
YKEVLLDDMGLSIKNSLSLQRPPGPPSQSVRGSSTNYPFWPGGMDEPSLDTIKSKGEFEE
SIDFEKDLLTVPPGWKRGMDFKKREHKVTSGLLNLTNLIGTMDDFNLGGSSDEEDEKKAK
TTETKRPLHRTNSLEDLVLQELKVTPQPERSEQKEEGSVPEKEQWAVPVDISTPVDDFYK
RIPDPAFKWPFEPDVFQKQAILRLETHDSVFVAAHTSAGKTVVAEYAIALSQKHLTRTIY
TSPIKALSNQKFRDFKNTFKDVGLLTGDVQLHPEAACLIMTTEILRSMLYNGSDVIRDLE
WVIFDEVHYVNDAERGVVWEEVLIMLPDHVNLILLSATVPNTLEFADWIGRIKKKKIYVI
STMKRPVPLEHHLYTGNSQKTQNELFLLLDAQGNFLTKAYYAAVEAKKERSSKHSQSFGA
KQPVYYGGSSQDKSVWLSLIDMLRKKDSLPIVAFTFSRNRCDENANMLTTVDLTSTVEKS
EIHIFFQKCISRLKGTDRELPQVLQMVELLKRGIGVHHSGILPILKEVIEMLFTRGLVKI
LFATETFAMGVNMPARTVVFDTIRKHDGTNFRDLTPGEYIQMAGRAGRRGLDTTGMVIIL
CKSGVHEMADLHKMMLGKPTLLQSQFRLTYTMILNLLRVEALRVEDMMKRSFSEFHTRKD
AKIYEQQIQELSKKLSSMDEVECIGQLSDLEHYYNTVRELLYTRDALQKSIMESTSAVKT
LSVGRVLVVKNQRHKNALGVILQVCTDSSNRSFTTLVLSESRQEETGKDVEESPVAPTPD
YLLANKLFFPEGPCGHVVEKLTAKDIGSITVKTLRINADKIIDDYKKRQIPRFRNDPPGP
SVTTATQELLRLVEAHPDGIAGMDPIGDLQLKDLDLVDSYTRARRLEDSLSAFTCIHSPR
FSTEYTRMHERMMIKDELERLRFLVSDRSLMLLPEYEQRVNVLKALKYIDESCAVQLKGR
VACEISNHELIVTEMVFENVLTDLQPEEIVALLSCLVFQQKTQVEPELNEVLRKGIERIR
GVAERIATLQRECSLRESVEDYVEQFKFGLVEVVYEWARGLPFAEITRLTDVQEGIIVRC
IQRLNETCRDVRNAARIIGDPTLNAKMEQASNLIKRDIVFAASLYTQ
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggaaagaattgaagtgcctccaaagcatcctgatgaccttccgttgtccatc
ttggaagtgggctgctctgggaagtttgagttgattacagagcctgcgaaaaagaacggg
tacatctttcccttagcgacacttccacatggcctaccaccattcgccttggacctcatc
actgaggcagagcaacgctttctgtctgacccgtcgttgctgcccctccatcattttgaa
aactcccagaaggtctggccaagagaggtatgcgtggattctctgtatcacgtcgatatc
acccctgttcattcaacgctgaaagtggagaggaaccagaccacgggcgagttgctgggc
tataaagaggtactactggatgatatgggattgtcgataaagaactccctttctctgcag
cgaccacctggccctccgtcacaatctgtaagaggcagttccaccaattacccattttgg
ccagggggcatggatgagccaagtttagatacaattaagtcaaagggagaatttgaggaa
agcattgactttgagaaggatttactcactgtgcctccaggatggaaaagaggaatggat
ttcaaaaaaagagagcataaagtgacctctggcttattgaacctaacaaaccttattgga
acgatggacgacttcaatctcgggggatccagcgacgaagaggatgaaaagaaagcaaag
acaactgagaccaagcggcctctccacagaaccaacagcttggaagatttggtgttacag
gagctgaaggtcacccctcagcctgagcgaagtgagcagaaagaggaagggtctgtacca
gagaaggagcagtgggctgttccagtcgatatcagcacccctgtggacgatttctacaag
cgcatcccagatccagctttcaagtggccctttgagccggacgtctttcagaaacaggca
atccttcgtcttgagacccatgattccgtgtttgtggcggcccacacgtcagcgggcaag
actgtcgtcgctgaatacgctatcgcactttcacagaaacacctgaccaggaccatctac
acgtcgcccattaaggccctgtccaaccagaaattcagggatttcaaaaacacttttaaa
gatgttggccttctgactggagacgtccagttacatccagaagctgcctgcctcataatg
acgaccgaaattctcaggtccatgttgtacaatggctcggacgttattcgtgatcttgaa
tgggtgatatttgatgaggtccattatgtcaacgatgccgagaggggtgttgtatgggag
gaagtgctgatcatgctcccagaccatgtgaatctcattcttctgagcgctacagttccc
aataccctggagtttgccgactggatcgggaggataaagaagaagaagatctatgtgatc
agcaccatgaagaggccggtgcctctggagcatcatctgtatacgggtaacagccagaag
actcagaacgaactcttcctgctgctcgacgctcaggggaacttcctcaccaaggcgtac
tacgcagcagttgaagccaagaaggaacgtagcagtaagcactcacagtcttttggagcc
aagcagccagtgtactatggagggtcgagccaggataagagcgtgtggttatccctgatt
gacatgctgaggaagaaagacagccttcccattgtggcgttcaccttctcacggaaccgc
tgtgatgagaatgccaacatgctcaccaccgtcgacctcaccagcaccgtggagaagagc
gagatccacattttcttccagaagtgcatctcccggttaaagggcacggacagagagcta
ccacaggtccttcagatggtggagcttctgaagcgaggaattggtgtccatcacagtggg
atccttccaatcctgaaggaggttattgagatgctgtttaccaggggacttgtaaagatt
ctctttgcaactgagacctttgcgatgggagtgaacatgccagccagaactgtggtgttc
gacacaatccgcaaacatgacgggacaaattttcgagacctgacaccaggtgaatatatt
cagatggctgggagggcaggaaggagaggactggacacaactgggatggtcattatcctg
tgcaagtctggggtccatgagatggctgacctccacaagatgatgttgggaaagccgaca
ctgctgcagtcacagttccgtctaacctacaccatgatcctgaacctgctgcgggtggaa
gctctccgggtggaggacatgatgaagcggagtttctccgagttccacaccaggaaagat
gccaagatatatgaacagcagattcaggagctctcaaagaagctgtcaagcatggatgag
gtggagtgcattggtcagttgagtgacttagagcactattacaatacagtgcgggaactc
ctatacacgagggatgctctgcagaagagcatcatggaatccacaagtgctgtcaagaca
ctgtctgtcggtcgagtcctggtggttaaaaaccaacggcacaagaatgccctgggagtg
atcctgcaggtttgcacagattccagcaaccggtcgttcaccaccctggtcctctcggag
tccaggcaagaggagacggggaaagacgttgaggaatcacctgtggcacctactcctgac
tacctccttgccaataaactcttctttcctgaaggaccctgtggccacgtggtggaaaaa
ctgaccgccaaagacatcggcagcatcactgttaaaaccctgcgcatcaatgccgacaaa
atcatcgatgactacaagaagaggcagatccctcgcttcaggaatgacccacctggccct
tcagtcaccactgccactcaggagctcctgcggctggttgaggcccacccagacggcatt
gctggcatggaccccatcggtgacctgcagctgaaggacctggacctggtcgacagctac
accagggcgaggagactcgaggactccctcagtgcatttacctgcatccacagccccagg
ttctccaccgagtacacacggatgcacgagcggatgatgatcaaagatgagctggagcga
ctccgtttcctggtgtcggaccggagcctgatgctgcttccagagtatgagcagagagtt
aatgtgctgaaggccctcaagtatatcgacgagagctgtgctgtgcaactgaagggccga
gtggcctgtgagatcagtaaccacgagctgattgtgacagaaatggtctttgagaacgtg
ctgacagacctgcagccggaggagattgtcgctcttctatcctgcctggtcttccagcag
aaaacacaggtggagcctgaactgaatgaggttctgcgcaagggaatcgagcggatccgt
ggtgttgctgagaggatagccacgctgcagcgggagtgcagcctgcgtgagtcggtcgag
gattacgtggagcaatttaagtttggcttggtggaagtagtgtacgagtgggcccgggga
ctgccctttgctgagatcaccaggctcacggacgtccaggagggcatcattgtgcggtgc
atccagcggctgaacgagacctgtcgggatgtacggaacgccgcccgcatcatcggggac
cccactctcaacgccaagatggagcaggcctcgaacctcatcaagagggacatagtgttc
gccgccagcctatacacccagtga
DBGET
integrated database retrieval system
