Rhincodon typus (whale shark): 109918483
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Entry
109918483 CDS
T06055
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog
Organism
rtp
Rhincodon typus (whale shark)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
BRCT_2
zf-RING_UBOX
zf-RING_2
PTCB-BRCT
zf-Nse
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_6
zf-RING_5
zf-RING_10
RTT107_BRCT_5
Sina_RING
Motif
Other DBs
NCBI-GeneID:
109918483
NCBI-ProteinID:
XP_048470696
LinkDB
All DBs
Position
30:23935471..23999311
Genome browser
AA seq
1923 aa
AA seq
DB search
MSLCKSEIEHVHKVLSLMLKNLECPICLELMKEPISTKCDHRFCRFCIFKLFGTKNTIPC
PLCKNVITKRSLQESTRFKQLTEGIMKMIHAFQLDTGYEFSIDNTPNKTPTEISAYRDLW
QDDTRAWSDNTPQNITATGISKNRTLKVHSDPPLTEFVRRVSTRNKRQKIERTPAYVGID
SDSSEEPLFKTHVNIKSTLHPRTVNTNTTPQKEKVDQSDNDEKPCQGKESNLSQPIREEL
FSSKIDDNDVPENTENTNVGDYSCATESETEQKQMTKDKSVSDFCSPEAHGKIIANKNSL
QIAAEWVNKQNCTDGNKLFTDRTMPFSEKSVLEKDANLLDNHEKLNQKVSHQMVKDETDF
QRSINQSKNSSVPQVSKRKSQRVMKKVSEWLSKINVDEVATLAVDPNPRDQNVESDSLAE
RESPASDEEASSAEDAENVKNGHLSSFKQKMPKTTPADIKNKIFAKTYKRDKRKSVPVNW
SFNSDSKSDDLTSHREDIFDRCSKTQKAKRKSNGLNPEDFIKRTVSEEDNRDTGVQNENN
EIDPKENVPVFKNIETETNKEILDGSSDIKQIDKLVVTTPTKVAISNDIIMKDSEQNVQQ
LKSELCKTDAEGKKKMSKSLGKKGKKSSIDRTKKKTKPLQLVNHIVRADGSPRSNPIFMD
ENKIDSFPSSEEPVKAELETRITRRSSRLKLLDEELIMQDKNKGKKSKLIRSHSVLSPSA
SFAPFAEPIEKNTEEGMVCLESENLPMQDVIVQTCKDHLPDADCSKQDYVASNESFANSV
VEELEGSAVCQLKDCHKTAETKDAAVLAEHPLRSDHSSFVAASGRNSEASGSEASLLLLA
PQLVPGERPSDPQLHCRYVGKGEVTPCGSRSRARTVMNKANSSEDVSIKQRTRSKETNED
SEVDTELLLKSFRLSKRRSFILMAATEHQAAQDACTTAPDTQCIDNVAACNSEEIKTEDA
VIRDTDGNDGTHQELGKVNLDKIDSPIQNAKVASDDKSKLCTFNLGNVQQLLNRENGNSV
EIVPPTASTLGSPLPSVLAQHVQKVVPPSRSRSKGNRYTRLLRRKGLNCSSSVVTTEKEI
FDSDRSSQAKANEQFFSNARDNSWHTKNTKIVKNRGLEVAVGQEAQHDFLSTRLASSALP
ESELLFSTRDLLGQEASEKDNRQENTSEKLPKERGLYKTGNLPLNGLLAVENTTENKLDK
STDVARCHTQPTFMNTQQSTTVKNETSENKCPEISQISSITPDGLLDNTEGTLNKIITKI
VDELDEVQSVYELRPCEEQLRQHEAATEKPVSSSHSKSSTEGQLKGRKKRPVKLSTSESE
TSDEELPCFQIFGFNSSRSNAPTVSESPSVTGYLSLKGSPGQAFSLPNSSTEIKKTDCSE
ANKLEENVGSEGSLKNKCLSPSQESGESPDLFSSQSDGSSPDASPQPKMSRKTLRQINAL
SVTELENQEEKNYSTVEETVGAQHLQPPCLEGENVPVNDSEASHIGDSSPESEILTTQQR
HAIQDNIKKLEHEMAVLEAVLDEHGSQDSEHLLSMNDREDCPELIEFNGSEVTADFYQGH
IENLQSRSRCLPAAEVLNTSVTFMHEVQEKSECPESLGHLEIRQIPEKHQAANDLLDQFQ
AKAGSKNEMINSPNAAQKEGETKVHVNSDCEESQSTENVVGNASTLQPENENANRRTMLQ
SSEESKSSPTSSPVFNKTSNATKNTVVTIQRNMSLVASGLNKNENLLVETFARKTGATFL
STFSTSTTHVIMKTDTDLVCERTLKYFMGIAGRRWVVSYQWIIECFRKGMVIDEHEFEVK
GDVINGRSHNGPRKARKTPDEKLLLSHYEVCCFGSFTGMSRDQLEWMVELCGASIIKEPY
LFTYSPNRTAVVIVQPDANPENTDYRAIQRQYNNFVVTREWILDSVACYQNHQLDAYLVC
LPH
NT seq
5772 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgtgcaaatcagagattgagcacgtacacaaggttctctcattaatgctgaaa
aatttggagtgtccaatatgcttggaattgatgaaagaaccaatttcaacaaaatgtgat
catcggttctgtcggttctgtatattcaagctttttgggacgaaaaatacaataccgtgc
ccactttgtaagaacgtaattaccaagagaagtctgcaggaaagcacacgctttaaacaa
cttacagagggtattatgaaaatgatccatgcctttcaattggatacaggttatgagttt
tccatagacaacacaccaaataagaccccaactgagatcagtgcttacagagacttatgg
caggatgacactcgggcttggagcgacaatacaccgcaaaacattacagctactgggatc
tccaaaaatcgcactttgaaggtgcactctgatcctcctttgactgaatttgtaagaaga
gtttccacaagaaataaaaggcagaaaatagagagaactccagcctatgttgggattgat
tcagattcttcagaggagcctttgttcaaaacacatgttaacataaaatcaacgctacat
ccaaggactgttaatacaaatactactcctcaaaaagagaaagttgatcaaagtgacaat
gatgagaaaccttgccaaggaaaagaatcaaacctatctcaaccaatacgggaggagctg
ttttcatcaaaaatagatgataatgatgtgccagagaatactgaaaatacaaatgtaggt
gattattcctgtgcaactgaatctgaaacagagcaaaaacaaatgaccaaggacaaatct
gtaagtgacttctgtagcccagaggcacatggcaaaatcattgcaaataagaactcgtta
cagattgctgcagaatgggtgaataaacaaaactgcaccgatgggaacaaacttttcact
gacagaacaatgcctttttcagaaaaaagtgtgttagagaaagatgccaatctgttggat
aaccatgaaaagttaaaccagaaagtttcccatcaaatggttaaagatgaaactgatttt
cagagaagtataaaccagtctaagaattcatcagttccacaggtgtccaagagaaaaagc
cagagagtcatgaagaaagtcagtgaatggttatccaagattaatgttgatgaggtggca
actcttgctgttgaccctaatccacgtgaccagaacgttgagtcagattccttagcagaa
agagagagccctgcctctgatgaggaagcttctagtgcagaagatgctgaaaatgttaaa
aacggtcacctctcctctttcaaacaaaaaatgccaaaaacaactccagctgacattaaa
aacaaaatctttgcgaaaacctataagagagacaagagaaaaagtgttccagtaaactgg
agttttaattctgacagtaagagtgatgatttgacttctcacagagaagacatttttgac
agatgcagtaaaactcagaaagcaaaaagaaaaagcaatggactgaaccctgaagacttt
ataaagaggactgtaagtgaagaagataatcgtgacaccggtgttcagaatgaaaataac
gaaatagaccccaaagagaatgttccggtatttaagaacattgaaacggagacaaataaa
gaaatattagatgggtcatctgatatcaaacaaattgacaaactagttgttaccacacca
accaaagtagcaattagtaatgacataataatgaaggattctgagcaaaatgtgcagcag
ctcaagtctgagttgtgtaagacagatgctgaaggcaagaaaaaaatgagcaaaagtttg
gggaaaaaagggaaaaaatcatcaatagatcggaccaaaaaaaaaactaaacccttgcag
ctggttaatcacattgtcagagctgacggaagcccgagaagcaacccaatttttatggat
gagaacaagattgatagtttccctagtagtgaagaaccagtgaaggctgaactagaaact
aggattaccagaagaagcagcagactgaaattgctggatgaagagttgatcatgcaagac
aaaaacaaagggaaaaaatctaaattgatcaggtcacattcagtcctctcacctagtgca
agctttgccccttttgcagagcctattgagaaaaatactgaagaaggaatggtgtgttta
gaaagtgagaatttaccaatgcaggatgttatagttcagacttgtaaggaccatttacca
gatgctgactgttcaaagcaagactatgtcgcttctaatgaatcatttgctaactctgtg
gtagaagagcttgaaggcagtgctgtatgtcagttaaaggactgccacaaaacagcagaa
accaaggatgctgcagtgctagctgaacatccattacgctctgatcactcttccttcgtt
gcagcatctggcagaaactctgaggcttcaggttcggaagccagcttgttactacttgca
cctcagctagttccaggggaaagacctagtgaccctcagttacattgcaggtatgtgggt
aagggtgaagtgaccccatgtggaagtcgttccagagcaagaacagtaatgaacaaagca
aacagcagtgaagatgtatccatcaaacaacggacaagatcaaaggagacaaatgaagac
agtgaagtagacactgaacttcttctaaagtctttcaggttatcaaaacgaagatcattc
attcttatggcagccacagagcatcaggctgcacaagatgcatgtacaacagctccagat
acccagtgtattgataatgtagctgcttgtaattcagaggagatcaaaacagaagatgca
gtaatcagagacactgatggaaatgatggtacacatcaggaactgggaaaagtcaatttg
gataaaattgattctccaattcaaaatgctaaggtggctagtgatgacaaaagcaaactt
tgcacatttaatttgggcaatgtgcagcaactattgaatagggaaaatggcaattctgta
gaaattgtgcctccaacagcctcaacgcttggatcacctctaccttctgtacttgcacag
catgtccagaaggtggtgcctccatcaaggagcagatcgaagggaaacaggtacaccagg
ttgctcagaaggaaaggattaaactgtagtagctcagtggttactacagagaaagaaata
tttgattctgatagatcaagccaagccaaagctaatgagcagttctttagcaatgcaaga
gacaattcatggcacacaaaaaacacaaaaatagtcaaaaacagaggcttagaagtagct
gtcggccaggaggctcagcacgatttcttaagcacaagacttgcatccagtgcccttcca
gagtctgaattattgttttcaacaagagatctgcttggccaagaagcaagtgaaaaagat
aatcgtcaagaaaatacttcagaaaaattgccaaaagagagaggactctataaaactggc
aacttacctctaaatggtctcttggctgtagaaaacaccacagaaaacaagttggataag
tcaactgatgttgcaagatgtcacactcagcctacgttcatgaacacgcaacaaagcaca
actgtcaaaaatgaaactagtgagaacaaatgtccagagatttcacagatatcttccatt
actcctgacgggctgttggacaatactgaaggaaccctaaataaaatcattacaaaaatt
gtggatgaactggatgaagtacaaagtgtgtacgagttgagaccgtgtgaagagcaactg
agacaacatgaagctgcaacggagaaacctgtgagctcctcccattcgaagtcctcaact
gaaggtcaacttaaaggccggaagaagcgaccagttaaactatcaacttcggaatctgaa
acaagtgatgaagagctgccatgttttcagatctttggattcaacagctcgcggtcaaat
gcgccaactgtgtcagaaagcccctcagttacaggatatctgtctttaaaaggctcacca
ggacaagccttttcattgcccaacagcagcacagaaattaaaaaaactgattgttctgaa
gcaaataaattggaagaaaatgtaggtagtgaaggctctctcaaaaataaatgcctttcc
ccaagccaagaatctggagaatctcctgatttgttctcttctcagtctgatggttcatcc
cctgatgccagtccccaaccaaaaatgagcaggaagactctgagacaaataaatgcttta
agtgtaactgaattggaaaatcaagaagaaaaaaattacagcacagttgaagaaacagtg
ggagctcaacatcttcagccaccgtgtttagaaggtgagaacgtacctgttaatgatagt
gaagccagccacataggtgactcgtctccagagagtgagattctaaccacacagcaaaga
catgcaatacaggataacatcaagaaacttgaacatgaaatggctgtgcttgaggcagtc
ctggatgaacatggaagccaagactctgaacacctgctgtcaatgaatgaccgagaagac
tgtccagagttaattgaatttaatgggagtgaagtgactgctgacttttaccaggggcac
attgaaaatttgcaaagcagatcaagatgtcttccagcagctgaagtcctaaatacaagt
gtaacttttatgcatgaggtccaagagaagtctgaatgcccagaatctcttgggcatttg
gaaattagacaaataccagagaaacaccaagctgcgaatgacttgctggaccaattccaa
gctaaagctggttctaaaaacgaaatgatcaattctccaaatgcagcacagaaggaaggg
gagacaaaggtgcacgtaaactcagattgtgaagaaagccaatctacagagaatgtagtc
ggcaatgcaagtacattacagcctgaaaatgagaatgctaacagaaggacaatgttgcaa
agctctgaggaaagcaaatcttcaccaacttcatctcctgttttcaacaaaacttcaaac
gccaccaagaacacagttgtgacaatccaaagaaacatgtccttagtagcctctggtctg
aacaaaaatgaaaatctattggttgaaacgtttgcaagaaaaacaggggccacatttctc
agtactttttcaaccagcacaacccatgtcatcatgaaaacagatacagatctagtttgt
gagagaacgctgaagtacttcatgggaatagcggggaggcgatgggtcgtcagttatcaa
tggatcattgagtgtttcagaaaaggaatggtaattgatgagcatgagtttgaggtgaag
ggtgatgtaatcaatggaagaagtcacaatggcccaagaaaagcaagaaaaacaccagat
gaaaaacttctgttaagccattacgaggtttgctgctttggttcttttacaggtatgagc
agagatcagctagagtggatggtagagctctgtggtgcctcaataattaaggaaccttat
ttattcacctacagtcctaatcgtactgcagtggtgattgtgcaacctgatgctaatcca
gaaaacactgattatagagcaatccagagacagtacaacaactttgtagtcaccagagaa
tggattttggacagtgttgcttgctatcagaaccatcaactagatgcatatctagtctgc
cttccgcattga
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integrated database retrieval system
