Rhincodon typus (whale shark): 109918486
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Entry
109918486 CDS
T06055
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04120
Ubiquitin mediated proteolysis
rtp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109918486 (syvn1)
04120 Ubiquitin mediated proteolysis
109918486 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109918486 (syvn1)
Enzymes [BR:
rtp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109918486 (syvn1)
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109918486 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-HC5HC2H
zf-Nse
zf-RING_Vps41
Endonuclease_7
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
109918486
NCBI-ProteinID:
XP_048475720
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Position
43:complement(8774797..8808844)
Genome browser
AA seq
624 aa
AA seq
DB search
MVRSTLATAASLVLTTTVVTHAYYLKRQFYPTVVYLTKSSPSMAVLYIQAFVLVFLIGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWLFHFRVVSLTSLLALLDLLFVNHACHSIMTRGASVQLVFGFEYAI
LLTMVLTIFIKYILHTIDLQSENPWDNKAVYMLYTELLTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLTMRQFKKAVTDAIMSRRAIRNMNTLYPDASPEDLQQTDNVCIICREEMVT
GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRVTPPMQTPPQQPQPQVPQTPLVPQQ
PNLPPGMPPFLPGMFPFWPPMGQHLFPQAPGAAPSAPQPNTSAATSAEGQANTANGEESR
STEAMSGTGLEPPPAGSIPGFPFSFPAFPSAPWVGMPPPPFGMPPMPMPPSGFAGLTDEE
LRAMEGQERQNLEARLQCLQNIHTLLDAAMVQIHQYLSVVATLSPPRPTATTSSAPSTES
TDPASGSQVDSTGDSPPPAFDSTSAQPPLQPEDIGQSDLEGAVGYSVPDSAEVPGNEKDP
LSEPDAAELRRRRLRKLDLPSTHH
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggtccgatcgacgttggccaccgctgccagcctggtgctcaccacaactgtggtcacc
catgcctattacctgaagcggcagttttaccccactgtggtgtacctgactaaatccagc
ccaagtatggcggtgctgtacatccaggcatttgtcttggtcttcctcattggcaagttc
atgcggaaagtgttctttgggcagctgcgcgctgcggagatggagcatttaatcgagcgt
tcctggtacgctgttactgagacctgcctggcattcaccgtcttccgggatgattttagc
ccacgctttgtggccctcttcaccctgctgctctttctcaagtgcttccactggctagct
gaggacagggtggactttatggagcggagtccaaacatctcgtggctttttcacttccga
gttgtctcactgacaagtttactggctctgttggatctgttgtttgtaaaccatgcctgt
cacagcatcatgactcggggagcatccgtccagctggtgtttggctttgagtatgccatt
ctcctcaccatggtgctgaccatattcatcaaatacattctgcacaccattgatcttcag
agtgagaatccctgggacaacaaggctgtgtatatgctctacaccgagcttctgaccggg
ttcattaaggtgctgctctacatggccttcatgaccataatgatcaaggttcacacattc
cctctgtttgccatccgtcccatgtacctgactatgaggcaattcaagaaggcagtgact
gatgccatcatgtcgagacgagctattcgcaacatgaacacactgtatcccgatgccagt
ccagaggacctccagcaaaccgacaacgtctgcatcatttgccgtgaggagatggtgact
ggagccaaacgcctgccgtgtaaccatatcttccacaccagttgtctccgttcctggttc
cagcggcagcagacgtgccccacgtgtcgcatggatgtgctgcgggtcacgccccccatg
cagacaccaccacagcagcctcagccgcaggtgccgcagacgcccctggtcccccagcaa
cccaatctgcctccagggatgccaccctttctgccaggaatgttccccttctggccaccc
atgggtcagcacctcttcccacaggctcctggtgcggctccaagtgcaccacagccaaac
acgtcagctgctaccagtgcagagggccaggctaacactgccaatggtgaagaatcccgg
agcactgaggccatgtcggggactggtttggagccaccccctgctggatcgatcccagga
tttccattttccttccctgccttcccgtcggctccttgggtgggaatgccacccccgcca
tttggaatgcctccgatgccaatgccaccttccggctttgccggattgacagacgaggag
ctccgagcaatggaaggtcaggagcgtcagaatctggaagcgagactgcagtgccttcag
aatattcacacgctactggatgcggccatggtccaaatccaccagtacctctcggtcgtt
gctactctcagtccgcccagaccaacagcaactaccagctcagcaccaagcacggagtct
acagatccagcatctggatcgcaggtggattcaactggagactctccacctcctgctttc
gacagcacctctgcacaacctcccctgcaacctgaagacatagggcagagtgacctggaa
ggggcagtgggatactccgtacctgactcagctgaagtcccgggcaacgagaaggaccct
ctcagtgaaccagatgcagccgaactgcgccggcggcggctacggaaacttgacctgccc
agcacccatcactga
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