Rhincodon typus (whale shark): 109918488
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Entry
109918488 CDS
T06055
Name
(RefSeq) pre-mRNA-processing factor 39-like
KO
K13217
pre-mRNA-processing factor 39
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109918488
Spliceosome [BR:
rtp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
109918488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
Cornifin
TPR_19
TPR_16
TPR_15
ARM_TT21_N
HrpB1_HrpK
TPR_MalT
ARM_TT21_5th
C5orf34_2nd
OEP
Motif
Other DBs
NCBI-GeneID:
109918488
NCBI-ProteinID:
XP_020374013
LinkDB
All DBs
Position
43:complement(8745716..8772026)
Genome browser
AA seq
1109 aa
AA seq
DB search
MVTGVMEAVDNPWLEPERNPPASAPTSDNEQKLLNKSRRVRSNQCITQDVSTRPLSLRVD
ETAVEEASADSPSPCDGDTGEESAASTPAPSDGDTGEELAADSTADTGEESAADSTGPSD
GDSGEESAADSTGPHDTGEESAADSTGPSDGDTGEESAADSPAPCNIDTLLDTAADSTGP
NDRDIREETAADSPGPCDTDSIEQAAAGSPGPCDGDTVGETAADSPGPCDTDTMQQGTAG
SPGPCDTDPVGDTAADSPGPCDTDTIEQGAAGSPGPCDTDTVRETAASSPGPCDTDTGGE
TAAASPGPCDTDTVGETAADSPGPCDGDTVGDMAADSPGPCDTDTVGETAAYSPSPRDRN
EVEKLAAESPRPSGVQTTAGDLAASPNPPSDQDTVAEMEIDGLGMDKETTEELEIAECTN
AGGGQDAVSGLAADSSSSATMLEAAMLLPESANGPQHTMDKLISSDIADYMATESTASSL
DVYGQASGDYGVLEAEDSIPPYPTDFEKYWKIVEDNPYDFTGWTYVLQYVEQENHIWAVR
KAFDAFFARYPYCYGYWKKYADIEKRLGFTREAEEVYQRGLQSIPLSVDLWVHYITFLQE
ILDATNPETPAKLRSVFEMALAAAGTDFRSDRLWDLYVNWEKEQGQLKAVTAIYDRVLSI
PTQLYSHHFEKFKEHVQSYSPKDILSTDEFLKLRSEVVSSLAAAETEGDEGPPGDDPPPG
VGTTDEEKADTELEKIRAHLAATRHEMYLLNEEEVSKRWNFEEAIKRPYFHVKPLERVQL
KNWKDYLDFEIASGTNERVLVLFERCMIACALYEDFWIKYAKYLENHSVEGVRNVFQRAC
MVHLPKKPTLHLLWAAFEEQQGDLEEARRILKSFQMVVPGLAMVLLRRVSLERRCGRLDR
AEELLREAIEQHRGTALASFFSIKLARQLLKVQKNMVKARKVLLEAIERDKDNSKLYLNL
LELEFSSDIRVNESNILGCFEQVLVSSLPLETKIVFSQRRVEFLEDFGCNVQSLLHAYDE
HQKLLKQNSSKKRAAENGTEELEEKRARMDDSSTISTASTATTSTNSTTLMSGDVTSSQA
AYNYSAWYQPYGSYGYQNPWNYSQYYPHS
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggtgacaggagtaatggaggcggtggacaatccgtggctggaacccgagcggaatccg
ccggcatccgctccaacgagtgacaatgagcagaaattattgaacaaaagccgccgagtt
aggagcaatcagtgcatcacgcaggatgtgtccactcggccccttagcctgcgtgttgat
gagactgctgtggaggaggcctctgccgacagcccaagcccctgtgacggagacaccgga
gaagaatcagcagctagtactccggcaccgagtgacggggacaccggagaggagctagcg
gcggattccaccgcagacactggcgaggagtctgcagctgattccactggccccagtgac
ggagactccggggaagaatcggcagctgattccacgggaccccacgacacaggagaggag
tcagcagcagattccacaggcccgagcgatggtgatactggcgaggagtcagcagctgac
agccctgctccctgtaacatcgacacactactggacacggcggctgattccactggccca
aatgaccgggacattagggaggagaccgctgctgacagtcctggcccgtgtgatacggat
agtatcgagcaggcagctgcaggtagtcctggtccctgtgacggcgacactgtcggggag
actgctgctgacagtcctggtccctgtgatacagataccatgcagcagggcactgcaggt
agtcctggcccttgtgatacggaccctgtaggggacacagctgctgacagtcctggcccc
tgtgacacagacaccatagagcagggagctgcaggtagccctggtccctgtgatacagac
accgtcagggagacagctgcaagtagccccggtccctgtgatacagacactggcggggag
acagctgcagcgagtcctggtccatgtgatacggacactgtgggggagacagcagctgac
agtccaggtccctgtgatggagacactgtaggggatatggctgcagatagccctggcccc
tgtgatacggacactgtaggggagacagctgcttacagtcccagcccacgtgaccgaaat
gaagtcgagaaactggctgctgaaagcccccgtccatctggtgttcagaccacagcagga
gacctggctgcaagtcccaacccaccaagcgaccaggacacggtggcagagatggagata
gacgggctgggtatggacaaggaaacaacagaggaattggagattgccgagtgcacgaat
gcgggcggaggtcaggacgctgtgagcggactggcggctgactcttcgagcagtgcgaca
atgctggaggcagcaatgctgctccctgagagcgccaacgggccacagcacacaatggat
aaactgatcagttctgacattgcagactacatggcaacagagagcaccgcctccagtctg
gatgtgtacgggcaggccagcggtgattacggggtcctagaggctgaggacagcatccca
ccgtaccccacagactttgagaagtattggaagatagttgaggacaatccatacgatttc
acaggctggacttacgtcctgcagtatgtggagcaagagaatcacatctgggccgtgcgg
aaggcattcgatgcgttcttcgcccgctatccctattgttatggctactggaagaaatat
gctgacattgagaaacgcttggggttcaccagagaggcagaggaggtttaccagcgagga
ctccagtctatcccgctcagcgtcgatctgtgggtgcattacattacatttctacaggag
atccttgatgctaccaatcctgaaacccctgctaaactccggagtgtatttgaaatggcg
ttggctgctgccggcacagatttccgctctgaccgtctctgggatctctatgtgaactgg
gagaaggaacaggggcagctgaaggctgtgactgccatttatgaccgggtgctatcgata
cccactcaactgtacagtcaccactttgagaagtttaaggagcacgtgcagagctactca
ccaaaggacatcctgtccaccgacgagttcctcaaactgaggtcagaggtcgtgagcagc
ctcgcggcagctgaaactgagggcgacgagggcccccctggagacgaccctccccccggg
gtggggaccaccgatgaggagaaggccgacacggagctggagaagatccgagcccacctg
gcagccacccggcacgagatgtacctgctgaatgaggaggaagtcagcaagaggtggaat
ttcgaggaggcgattaagcggccgtacttccacgttaagcccctcgagagagtgcagctg
aaaaactggaaggactacctggattttgagattgccagtggcactaatgagcgtgttctg
gtattgttcgagcgctgtatgatcgcctgtgctctgtacgaggacttctggatcaagtat
gccaaatatctcgagaaccacagtgtcgagggggtccgcaacgttttccagagggcctgc
atggttcacctgcccaagaagcccaccctgcacctgctgtgggcagcctttgaggaacag
caaggtgaccttgaggaagcccgccgtatcctcaagtcgttccagatggtagtgcccggg
ctggccatggtgctactgcggcgcgtgagcctggagcgtcgctgcgggcgcctggaccgg
gcggaagagctcctgcgtgaggccatcgaacagcacaggggcacggccctggcctccttc
ttctccatcaagctagcccggcaactcctgaaagtccagaagaacatggtaaaggcccgg
aaggtgctgctggaggctatcgagagagacaaggacaactccaaactgtacctcaacctg
ttggagctggagttcagtagtgacatccgtgtgaatgagagcaacatcttgggctgcttc
gagcaggtgctggtcagctctctccccctcgaaaccaaaattgtcttctcccagcggaga
gtcgagttcctggaggattttggctgcaatgtacagagtttattacacgcctacgatgaa
catcagaaactcctcaagcagaactccagtaagaagcgggcggctgagaatggcactgag
gaacttgaggagaagcgagcaagaatggacgatagctccacgatcagcacagcgagcact
gcaacaaccagcaccaattccaccaccctcatgagcggagacgtgaccagcagccaggca
gcatacaactacagtgcgtggtatcagccttatggatcatacggatatcagaacccatgg
aactacagtcagtattacccacatagctga
DBGET
integrated database retrieval system
