Rhincodon typus (whale shark): 109918499
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Entry
109918499 CDS
T06055
Symbol
atg13
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04136
Autophagy - other
rtp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109918499 (atg13)
04136 Autophagy - other
109918499 (atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109918499 (atg13)
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109918499 (atg13)
Membrane trafficking [BR:
rtp04131
]
Autophagy
Autophagosome formation proteins
ULK complex
109918499 (atg13)
Atg1 complex
109918499 (atg13)
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
109918499 (atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
109918499
NCBI-ProteinID:
XP_048462866
LinkDB
All DBs
Position
17:complement(9798361..9886326)
Genome browser
AA seq
553 aa
AA seq
DB search
MDSELSPQDKKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPGIGRSMCVEISLKTSEGDSMELETWCLEMNEKCDKEIKVSYTVYNR
LSLLLKSLLAITRVTPAYKLSRKQGHDYVILYRIYFGEVQLNGLGEGFQTVRVGMVGTPV
GTITLSCAYRTNLAFMSSRQLERTQPIMGIIIDHFVDRPYSGSSPLHPCNYRTTGEDDGG
NFPYVEDSQEVCTTSFSTSPPSQCVFTVSKTHFQTPRPVVMDTLKVPLLGLTFTHQLYSS
RLSYQPFPTVGGGSTDLACCPAALTAGVNTAHPHQMVIPCKEGGIPVLPLHPAPGVQADG
DRVPTCNSTDMNQHVAATPPSSGEAELLSKSSEGKSGPPQDVLETTFTRKVGAFVNKPAN
QVTATNMDLPFAVFAPKIVESEDTDVLVNPPDSPIPESPLHASLHSDQSSGSSGLTQDEF
VMVELKPAFSKDDFLPMDLGTFYREFQNPPQLSSLSIDISAQSMAEDLDSLPEKLAIYEK
NMEEFDAFVDTLQ
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggacagtgaactgagccctcaggataagaaggatttggataagttcattaaattcttt
gccctgaagactgtccaggtaattgtgcaagcacggcttggagaaaagatatgtacccgt
tcgtcctcttctcctacaggctcagactggtttaaccttgcaataaaggacataccagaa
gtcacccatgaggctaaaaaggcactggcaggccaacttcctggaattggacggtcaatg
tgtgtggaaatctctctcaaaacatctgagggagattcaatggaactggaaacatggtgt
ttggaaatgaatgaaaaatgcgataaagaaattaaggtttcctacactgtctacaacaga
ctgtctttgctactgaagtcacttcttgcaatcacaagagtgacacctgcatataaacta
tccagaaagcagggacatgactatgtgatcctatacaggatttattttggagaagtacaa
ctgaatggcctgggtgaaggttttcaaacagtacgggtcggaatggttggaactcctgtc
ggtactatcacgctgtcatgtgcataccgaactaatctggctttcatgtctagcaggcag
ctggagcggacccagccaatcatgggaattatcatagaccactttgtagatcgtccctat
agtggatcttcaccattacacccatgtaactacagaactactggtgaagacgacggaggt
aattttccttatgttgaagactcccaggaagtctgtactacttctttctctacttctcct
ccctcacagtgtgtgtttactgttagtaaaacacattttcagactcccaggccagtggtg
atggacactctgaaggtccccctgctaggcttgacctttacgcatcaactctacagctca
cgcctttcttatcagccttttcctactgttggtggtggttcaactgatctagcctgttgc
ccagcagccttaactgctggtgtaaatactgctcatccacatcagatggtaattccttgt
aaagaaggaggcatacctgtcctgcctctacatcctgcccctggtgtccaggctgacggt
gatagagtgcctacctgtaattcaacagatatgaatcaacatgtggcagcaactcctcct
agcagtggtgaagcagaattgttatcaaagagtagtgaagggaaaagtggaccaccacag
gatgtattggaaacaacctttactaggaaagtgggagcatttgttaacaaaccagccaat
caggtcactgctaccaacatggatttaccatttgctgtatttgcaccaaaaattgttgaa
tctgaggatactgatgtcttggtaaatccacctgattctcctatcccagaatcccctctg
catgccagtcttcattcagaccagtccagtgggagcagtggcctcacacaagatgaattt
gttatggtggaacttaagccagccttttccaaggatgattttctacccatggatctgggt
accttttatagggaatttcagaaccctcctcaattgagcagcctctctatagacatcagt
gcccagtcaatggcagaggatctggattctttgcctgagaagctagcaatctatgagaag
aacatggaagaatttgatgcctttgtagacactctgcagtaa
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integrated database retrieval system
