Rhincodon typus (whale shark): 109918515
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Entry
109918515 CDS
T06055
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04010
MAPK signaling pathway
rtp04210
Apoptosis
rtp04218
Cellular senescence
rtp04620
Toll-like receptor signaling pathway
rtp04621
NOD-like receptor signaling pathway
rtp04622
RIG-I-like receptor signaling pathway
rtp04623
Cytosolic DNA-sensing pathway
rtp04625
C-type lectin receptor signaling pathway
rtp04920
Adipocytokine signaling pathway
rtp05132
Salmonella infection
rtp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109918515
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
109918515
04218 Cellular senescence
109918515
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
109918515
04621 NOD-like receptor signaling pathway
109918515
04622 RIG-I-like receptor signaling pathway
109918515
04623 Cytosolic DNA-sensing pathway
109918515
04625 C-type lectin receptor signaling pathway
109918515
09152 Endocrine system
04920 Adipocytokine signaling pathway
109918515
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109918515
09171 Infectious disease: bacterial
05132 Salmonella infection
109918515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109918515
Transcription factors [BR:
rtp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
109918515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
109918515
NCBI-ProteinID:
XP_048452311
LinkDB
All DBs
Position
1:176665743..176750218
Genome browser
AA seq
958 aa
AA seq
DB search
MSWSRSRSRPMMAEEDTYRLGVPDMYGIDDYNALELPNSMFTSPMGPTDSPLQTPDGPYL
QILEQPKQRGFRFRYGCEGPSHGGLPGASSEKNKKSYPTVKICNYVGQAKIVVQLVTYGK
DNVHLHAHSLVGKQCEKGICLVQVGPKEMISTFPNLGILHVTKKNVASTLEQRMTQAYVM
GYNNGVVIHPELNHRHSEGYGQRELTEREKELIHQASIQQAKEMDLSVVRLMFTALLPDS
SCRFTRKLEPVISDPIYDSKAPNASNLRIVRMDKTAGCVVGGDEVYLLCDKVQKDDIQVR
FYEEDENGGIWEAFGDFGPTDVHRQFAIVFRTPKYRDVDISKPASVFVQLRRKSDNETSE
PKPFTYYPLIKDKEEVQRKRLKLLPNFSDHFGGGAGSGGGGVYGGGGGAGGGSNYFAGFQ
GYSNYSSYTYTPGTTNSSAGMKHAVCCLTENSDCVKSAVSSTSSNQPTPEAGAQSTGILG
NSESADPAVTAEETEANQYFLEKALTLAERHASALLDYSVTGDTKMLLAVQRHLTAVQDQ
NGDTALHLAIIHFQSGVVQHLLQVIISLPGQDIINMRNDLYQTPLHLAVITRQAEVVELL
LQAGADMSLLDCLGNSVLHLAAQQGDVKVLNVLLSKKNKPLVKLLHLPNNAGFNVVHLAV
LANSLSSLRQLIAAGADVDSSEQQAGRTALHLAVEQENISLAGSLLLEGSAEVDATTFDG
STALHIAAGRGYTKLCALLIAAGADPHIENHEPLDDKTDESVEDDDDEGIFHGTTPLDMS
ASEEVYDILNGKPYQPKPAPVAPFPQGDLGQLDIEARLELCKLLEVPEPSLNWMALAQKL
GLGILINAFKLSQSPAKTLLDNYEVSGGTVMEILETLKSMGYNKAIDVLHKAMANSTSAQ
PDRTSNSPTPIVQPNIVQIDTKSQQCDSVCDSGVETSFRRLSHMSTECYSNNQTSFEL
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgtcatggtcaaggtcaaggtcaagaccaatgatggctgaagaggacacgtatcgtctt
ggagtccctgatatgtatggtattgatgattataatgctttagaattacccaactccatg
tttacctctccgatgggtcccacagattctcctctgcagacacctgatggaccatacctg
cagattctagaacaacccaaacagagaggatttcgtttccgttatggatgtgagggacca
tcccatggaggattacccggtgcatcgagtgagaaaaacaagaaatcctaccctactgtg
aagatatgcaactacgttggacaggcaaagattgttgttcagttggtgacctatgggaag
gataatgtacatctccatgctcacagtctcgttggcaaacagtgtgaaaaaggaatatgt
ttagttcaagtgggtcccaaggaaatgatttcaacatttccgaacctcggtattctccat
gtgacaaagaagaatgttgccagtacgcttgagcagagaatgacacaggcttatgtgatg
ggttataataatggagttgtaattcacccagaattaaatcatcgacacagcgaaggttac
ggtcaaagggagctcacagaacgtgaaaaggagttaatccatcaggcttccatacagcaa
gcaaaagaaatggacctgagtgtcgtccgtctcatgtttacagccctgcttccagacagc
agctgtcgatttacacgcaaattggaacctgtcatttctgatcccatctatgacagcaag
gcaccaaatgcatcaaatttgaggattgtcagaatggataagactgcaggatgtgtggtt
ggaggagatgaggtttacctactttgtgataaagtccagaaagatgatatccaggttcga
ttctatgaagaggatgaaaacggtggaatttgggaagcgtttggggactttggtccaaca
gatgttcatcggcagtttgctatagtttttagaacgccaaaataccgggacgtggacatt
tccaaacctgcgtctgtgtttgtacagcttcgtagaaaatctgacaatgaaacaagtgaa
ccaaagccatttacctactacccactgattaaagacaaggaggaggtacaaaggaagcga
ttgaaacttttaccaaatttctctgaccattttggaggtggagcaggctccggaggaggt
ggggtttacggaggagggggtggagcaggagggggttccaattactttgctggatttcaa
ggatattccaactacagtagttacacgtacacgcctgggaccacaaactccagtgctgga
atgaaacacgctgtctgttgcctgactgagaattccgattgtgtgaaatcagctgtgagc
tctacatccagcaaccagccaacacccgaggctggagctcaatccactgggatcctcggt
aactcagagtctgcagatccagcagtaactgccgaagaaactgaagcaaatcaatacttc
ttagaaaaagccctgacccttgctgagagacatgcgagtgccctgttggattattctgta
actggtgataccaagatgttgcttgctgttcagcgccaccttactgcagttcaggaccaa
aacggagacacagctttacatcttgcaattattcatttccaatctggagtggttcaacat
cttttacaagtcatcatcagccttcctggacaagacatcatcaacatgaggaacgatctt
tatcagacaccattgcacctggcagtcatcacaagacaggccgaggtggtcgaattattg
cttcaagctggagctgacatgagtctcctcgattgccttggaaactctgttctacacctg
gcagcacaacagggagatgtgaaggtgctcaatgtcctcctaagcaaaaagaacaagcct
ctggtaaaactcctccatttgccgaataatgcaggtttcaatgttgttcacctggctgtg
ttagcgaatagcctgtcgtccctgaggcagctgattgcagctggcgctgatgtggattct
tctgagcagcaagcaggtcggactgcactccacctcgcagtcgagcaggaaaacatctcc
ttggctggtagtctcctcctggagggcagtgcagaagttgatgccaccacttttgatggg
tctacagctcttcacatagcagcaggaagaggctataccaaactctgtgccttactaata
gcagcaggtgcagatccacatatcgagaatcatgaaccactggatgacaaaactgatgaa
tctgttgaagatgatgatgatgaaggaatctttcatggtaccacacccttagacatgtca
gcctcagaagaggtttatgacattctgaacggtaaaccataccaaccaaaacctgcacct
gtggctcctttcccacaaggtgatttaggtcagttggatatagaagcaaggctggagttg
tgtaaactgttggaggtacctgaacccagtctgaactggatggctctcgctcagaaactg
ggtcttgggattttaatcaatgcctttaaactcagccaatccccagcaaaaacacttctg
gataactacgaggtgtctggtggcactgtcatggagattctggaaacattgaagtctatg
ggctacaataaagcaatcgatgttcttcacaaagcaatggctaactcaacaagtgcacaa
ccagacagaacaagtaactcaccaacgccgattgtacaacccaacattgttcagattgac
acaaaatcccagcagtgtgacagtgtgtgtgacagtggagtggagacatcgtttaggaga
ttaagccacatgtcaacagaatgttacagcaacaaccagacttcttttgaactgtga
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integrated database retrieval system
