Rhincodon typus (whale shark): 109918519
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Entry
109918519 CDS
T06055
Symbol
efl1
Name
(RefSeq) elongation factor-like GTPase 1
KO
K14536
ribosome assembly protein 1 [EC:3.6.5.-]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109918519 (efl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rtp03009
]
109918519 (efl1)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
Pre-60S particles
GTPases
109918519 (efl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFL1
EFG_C
EFG_III
GTP_EFTU_D2
EF-G_D2
MMR_HSR1
Exonuc_VII_L
EFG_IV
Motif
Other DBs
NCBI-GeneID:
109918519
NCBI-ProteinID:
XP_048471966
LinkDB
All DBs
Position
33:complement(5850565..6092833)
Genome browser
AA seq
1142 aa
AA seq
DB search
MGHTNLENIVDLQKNTANIRNICIVAHVDHGKTTLADSLIASNGIISNRLAGKLRYMDSR
EDEQLRGITMKSSSISLHFTTNNQEYLINMIDSPGHVDFSSEVSTAVRVCDGAVVVVDVV
EGVCPQTQAVLRQAWLENIRPVLVINKIDRLIMELKLTPLEAYIHLQKILEQVNAVTGSL
FTSKVLEERAEMEETEKPSSDTQSSEHFYDWSAGLEETDDSHLYFAPDQGNVVFGSAIDG
WGFRIEQFAQMYSQKVGISAQVLLKTLWGDFYLNTKAKKIMKGAQSKGKKPLFVQLVLEN
IWSLYESVVVRRDKEKIDKIVSSLGLTILPRDSRHTDPKVHLNAICTQWLPISHAVLSMV
CNKLPSPLDIAAERVEKLMCVRSRRFDSLPPQVQALKQAFLECKSDETAPVIVFICKMFA
VDSKALPQNKLRPLSQAEIAQRREQARKRHAEKLINQMQKLEQNPPEKTLEISPVSASIK
GMHAESPMELADLTTCREESQQKECFIAFARVYSGTIRRGQKLFVLGPKYDPSEALTKMP
EGCSLNDDVSIPHLACCTVEDLFLLMGKELENVEEVPVGNVLGIGRLEDYVLKSATLSTS
PLCPPFTPLNFEATPIVRVAVEPKHPSEMPQLVRGMKLLNQADPCVEVLVQETGEHVLIT
AGEVHLQRCLDDLRERFAKVEISSSAPIVPFRETIIRPPKVDMVNEDIGTQQKIAVIHQK
KEDQNKYPEGVIVDSDGLVTLNTPNKLSTLSVRAMPLPEAVTQLLEESSDLIRTIEQFNL
SVKEGRDTQEINPTTLEAIQKFKQKLEENFVGRKWRNAVNQISSFGPRRCGPNILLNRLE
NYHRPSMWQCLDKTRKDLGTYKDFDNSIISGFQLATLSGPVCEEPLMGVCFILENWDMSK
VQQLVQIHNQSFTDGQTAKVEEFQQQVTSNESSLSELEPRLENQARPGDQIQDSRTPAES
VADGQSNSEVVLTDCYGPFSGQLIATMKEACRFAFQARPQRLMAAMYTCEIMATAEVLGR
VYAVLSKRTGRVLQEEMKEGTEMFIIKAILPVAESFGFADEIRKRTSGLASPQLVFSHWE
VIPSDPYWVPTTEEEYLHFGEKADTVNQANKYMNTVRKRKGLYVEEKIVEHAEKQRTLSK
NK
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgggtcatactaatttggaaaatattgttgatctacaaaagaatacagccaacatccgg
aatatctgtattgtggctcacgtggaccatggaaaaaccacgttagctgatagccttatt
gctagcaatgggataatttctaatcgacttgcaggaaagttgcggtacatggacagccga
gaagatgagcaactccgtggaatcacaatgaaatccagttccatatctctacatttcact
acaaataatcaagaatacctcattaacatgatagattctcctggccatgtggatttttcc
tctgaagtatcgactgctgtgcgcgtatgtgatggtgctgtcgtggtggtcgacgttgtt
gaaggtgtttgtcctcagacgcaagcagtgttacgccaggcctggttggaaaatattcgt
ccagttttagtcattaacaaaatagatcgactaataatggagctaaaattgactccactt
gaagcttacattcacttacagaagattctagaacaggtaaatgcagtgactgggagtctg
tttacttcaaaagtattggaagagagagcagagatggaagaaacagaaaaacctagttca
gacacccagagcagtgaacatttctatgactggagtgctggcctggaagaaacagatgat
tcgcatctctactttgcccccgaccagggaaatgtggtgtttggaagtgctattgatggc
tggggcttcagaattgaacagtttgcccagatgtacagccagaaagtgggtattagtgca
caagtgttgctgaaaactctctggggtgacttttatctgaacacaaaggcaaagaagata
atgaaaggagcacagtcgaaaggaaaaaagcccctctttgtacagttagtgttggaaaac
atctggagtctgtatgagtctgtagttgtcagaagggacaaagagaagatcgataagatc
gtaagttcgttgggcctaaccatcctacctcgtgattcacgccatacggatcctaaagta
caccttaatgccatttgtactcaatggcttcctatctcccatgctgtgttgtcaatggtg
tgcaacaagctccctagccctttggatattgctgcagagcgggttgaaaagctcatgtgt
gttcgaagcagaagatttgattcactgcctccccaagtccaagccctcaaacaagcgttc
cttgaatgcaagagtgatgagacagccccagtgattgtgtttatttgcaagatgtttgct
gttgattccaaggctttgccccaaaataagttaagacccttgagtcaagcagagatagct
cagcggcgggagcaggccagaaaaaggcatgcagaaaagcttataaatcagatgcagaag
ttggaacaaaacccacctgagaagactcttgagatctccccagtgagtgcaagtataaaa
ggcatgcatgcagagagtccaatggagctggcagatctgactacttgcagagaggagagt
caacagaaagagtgcttcattgcattcgctagagtatatagtggaacaattcgtagaggg
cagaaattgtttgtgctaggaccaaagtacgatccttctgaagctttaaccaagatgcca
gaaggatgctcactgaatgatgatgtgtcaatcccgcacttggcttgttgtacagtggag
gacttgttcctgctcatgggaaaggaattggagaatgtagaagaggtacctgttggcaat
gtgctaggtattggacgtctagaagattacgtcttaaaatctgctacgttgtcaacttca
cctctgtgtccaccttttacacctctgaactttgaggcgacgcctattgtacgggttgct
gtggaacccaaacatccaagtgaaatgccacagctggtgagagggatgaagctgcttaac
caggctgatccgtgtgtggaagtgttagtccaggagacaggagagcacgtattaataact
gctggagaggtacacctgcagcgttgcttggatgacctcagagaaaggtttgcaaaggtt
gaaatcagttcatcagcaccaatcgttccatttagggagactatcattcggccaccaaaa
gtagacatggtaaatgaagacataggcacacaacaaaagattgctgtcattcaccaaaag
aaggaggaccagaataaatatcctgaaggtgtcattgtggattctgatggtcttgtgacc
ttgaatacacctaataagttgtccactctcagtgtgagagccatgccacttcctgaagca
gtgacgcagttactggaagaaagcagtgatctaattcgtacaatagagcagttcaatcta
tcagtaaaagaaggcagagacactcaggagatcaatccaacaacacttgaggccatccaa
aagttcaaacaaaagttggaggagaattttgttggccgaaaatggagaaatgcagtgaac
caaatttcatcatttggaccacgccgttgtggccctaatattttactaaatagattggaa
aattatcatagaccatcgatgtggcagtgtcttgataaaaccaggaaagacttggggaca
tacaaggattttgacaacagtataatcagtggatttcagttggcgactctgtcaggtcct
gtgtgtgaagaacctcttatgggtgtttgcttcattttagaaaattgggacatgagtaaa
gtgcagcagctggttcaaatacacaaccaatctttcacagatggacaaacagcaaaggtt
gaggagttccagcagcaggtaacctcaaatgaaagtagcctttctgaattagagccgaga
ttggaaaaccaagcaagaccaggtgaccagattcaggacagtcggactccagcagagagt
gtggcagatggccagagtaactctgaggtcgtgcttacagattgctatggccctttctca
ggccagcttattgccacgatgaaagaagcttgtcgttttgcattccaggcacgacctcaa
cggctcatggcagcgatgtacacatgcgagattatggcaactgcagaagtattaggtcgg
gtctatgcagtcctttcgaagcgcacaggccgggtgttgcaagaagagatgaaagaaggg
acagaaatgttcatcattaaggccattttgccagttgcagagagctttggctttgctgat
gaaatccggaagaggacaagtggcctagccagcccacagctggtgttcagtcactgggag
gtgattcccagtgacccctactgggttcctacaacagaagaagaatacttgcattttgga
gagaaggctgatacagtaaaccaggcaaacaaatacatgaatactgtgcgcaagcggaaa
gggctgtacgtggaggaaaagattgttgagcatgctgagaagcagagaaccctcagcaaa
aataaataa
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