Rhincodon typus (whale shark): 109918571
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Entry
109918571 CDS
T06055
Name
(RefSeq) PDZ and LIM domain protein 4-like
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109918571
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
109918571
Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
109918571
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
SNAPC3
Motif
Other DBs
NCBI-GeneID:
109918571
NCBI-ProteinID:
XP_020374089
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All DBs
Position
12:complement(48716122..48823350)
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AA seq
325 aa
AA seq
DB search
MPHPVTLYGPSPWGFRLVGGKDYSQPLTISRVTPGSKASSANLCPGDVIVAINEDSTENM
NHLDAQNKIKACTDQLTLSINRVENKSWSPNGFEDGNSHPFKVDVQSQSQDYRPIGSSNN
RKPMPFAVEAKQSASIQYNTPAALYTNDNVNHTLQKQLSGLHVTSPQHTDPPKLSPKLWN
EVDTESDVYKMLQDGEEPASEPKQSGSFKILQGLLEAEQTGEKSERPAITKSVKSPVTKF
NSSAPTLQKLPQCTRCETGIVGAVVKAREKLYHPACFMCSDCGLNLKQKGYFFIEEQLYC
ETHAKARVQPPEGYEVVAVYPNSRV
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgccacatcctgtgaccctttacggaccgtcaccttggggctttagattagtagggggc
aaagactatagtcagcccctaactatctcccgggttacccctggaagcaaggcatcctca
gctaatctttgccctggtgatgttattgtggctatcaatgaagacagtacagagaatatg
aaccacctggatgctcaaaacaagatcaaggcctgcacagaccagctcactctctctatt
aacagggtggagaacaaatcctggtccccaaatggttttgaagatggaaactcccatcct
ttcaaagtcgatgtgcagtcgcagtcacaagattacagacccattggaagttcaaataac
agaaagccaatgccttttgcggttgaagccaagcaatcagcaagtatacagtacaacact
cctgctgcactctatactaatgacaatgtaaatcacactttacagaagcaattgagtggt
cttcacgttacctctcctcagcacactgatccaccaaagttatcaccaaagctgtggaat
gaggttgacactgaatcagatgtttataagatgcttcaggatggtgaggagccagcttca
gaacctaaacagtctggatctttcaaaatactacagggcctgctggaggcagagcagaca
ggtgagaaaagtgaaaggccagctatcaccaaaagtgtaaaatctccagtaacaaagttc
aacagttctgcacccacactacagaagttaccacagtgcactagatgtgagactggcata
gttggggctgtggttaaggcacgagagaaattgtaccacccagcgtgtttcatgtgttct
gactgtggattaaacctgaagcagaaaggctactttttcatcgaagagcaactatactgt
gagacccatgcaaaagcaagagtgcagcctccagagggatatgaagtcgtagctgtgtat
cccaattccagagtataa
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