Rhincodon typus (whale shark): 109918814
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Entry
109918814 CDS
T06055
Symbol
eif4a3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03013
Nucleocytoplasmic transport
rtp03015
mRNA surveillance pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109918814 (eif4a3)
09122 Translation
03013 Nucleocytoplasmic transport
109918814 (eif4a3)
03015 mRNA surveillance pathway
109918814 (eif4a3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109918814 (eif4a3)
03041 Spliceosome [BR:
rtp03041
]
109918814 (eif4a3)
03009 Ribosome biogenesis [BR:
rtp03009
]
109918814 (eif4a3)
03012 Translation factors [BR:
rtp03012
]
109918814 (eif4a3)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109918814 (eif4a3)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109918814 (eif4a3)
mRNA cycle factors
Stress granule specific factors
109918814 (eif4a3)
Spliceosome [BR:
rtp03041
]
Complex C
Other components
EJC/TREX
109918814 (eif4a3)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
90S particles
Helicases
109918814 (eif4a3)
Translation factors [BR:
rtp03012
]
Eukaryotic type
Initiation factors
eIF-4
109918814 (eif4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
109918814
NCBI-ProteinID:
XP_048456634
LinkDB
All DBs
Position
9:complement(19203377..19229139)
Genome browser
AA seq
403 aa
AA seq
DB search
MASSGRKRILKEEDISKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRA
IKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLA
LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE
ADEMLNKGFKEQIYDVYRYLPPATQVILISATLPHEILEMTNKFMTDPIRILVKRDELTL
EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH
GDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS
GRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcgagctcggggaggaagcgtatcctgaaagaggaagatatctccaaggtggagttt
gagacaagcgaggaggtggatgtcacccctacctttgacacgatgggcttgcgggaggac
ttactgcggggtatctacgcgtacggctttgaaaaaccatcagcaattcagcaaagggcc
atcaagcaaataatcaaagggagagacgtcattgctcaatcccagtctggtacagggaag
actgccacattctgtgtgtcagtgttacagtgcttggacattcaggttcgtgagacccaa
gctttaatattggcaccaactcgggaacttgcagggcagatacagaaggtactgcttgct
cttggcgactatatgaacgtacaatgccacgcttgtattggaggtaccaatgttggagaa
gacatccggaagttggactatggacagcatgtagttgctggtactccagggcgtgtattt
gatatgatccgaagacgaagtttgaggacacgtgccatcaaaatgttggttcttgatgaa
gcagatgagatgttgaacaaaggttttaaggagcagatctatgatgtgtacagatattta
cccccagccacacaagtaattctgatcagtgcaacactgcctcatgaaatcttggaaatg
accaacaagttcatgactgatccaatccgaatccttgtcaaacgtgatgagttgaccttg
gaaggaatcaaacagttctttgtagcagttgaaagggaggagtggaagttcgacacattg
tgtgacttgtacgacacactgaccattactcaagctgttattttctgcaatacaaaacgg
aaggtggactggctcactgaaaaaatgagagaggctaatttcacagtgtcatcaatgcat
ggtgacatgccacaaaaggagagagagtccatcatgaaggaattccgttctggtgcaagt
cgagtgctcatttctacagatgtttgggcacgaggattggacgtccctcaggtctcccta
atcataaactacgatttaccaaataacagagagttgtatatccacaggattggtcgatcg
ggtcgatatggccgaaaaggtgtggctatcaactttgttaagaatgatgacattcgtata
ctgcgagatattgaacaatattactctacacagattgatgaaatgccaatgaacgttgct
gaccttatttga
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integrated database retrieval system
