Rhincodon typus (whale shark): 109918879
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Entry
109918879 CDS
T06055
Symbol
smg8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109918879 (smg8)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
109918879 (smg8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
109918879
NCBI-ProteinID:
XP_020374420
LinkDB
All DBs
Position
26:complement(5897149..5915530)
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AA seq
913 aa
AA seq
DB search
MAAARALGAVLASDGEEAAWKDEEMCVVGIFGKTSELSAQKHAIINTLCDKPVFPLYPGL
PGGHHQGNNLLQCYYNQDSKVLYLLLTAVCDHQQLLQACRALADDVSHAEAHEFWKGEEK
LHCIHLLYLFSVSHILLLVHPTCSFDITYDRLFRALDTLRQKVLGYLKNAIKDCPVGKEW
RLNCRPCPPRLLFIFQLNGALKVEPKGLDPSNLDKPKKHSPKRRLQHALEDQIYRIFRKS
RVLTNQSINCLFTVPANQAFVYVLAGQEDDPISMLIGQLKSTCAIREQESLPLPGSRRYQ
MMRHVRQPSFILESNLNSSSGQLVDCTLKEFLWQHVELVLTKKGFEDSVGRNPQPSHFEL
PAYKNWLTVASKLYDVMLSGKDEELGFLTGDLSSKIQGQLKGLDGFLDADNKFSENRCQK
ALPLAHSAYQSNLPHHYTTTVHKNQLAQALRVYSQHARGPAFQKYAMQLHEDCYKFWSNG
HQLCEERSLTDQHCVHKFHLLPKPGEKPEPDRNPPVLYHNSRARSTSSCNCGRRQAPRDD
PFDIKSGNYDFYQLQEEKCCGKLEHFYFPVFQPSTPDPAPAKNESTVSSLPPQEGEGEKM
KEKEAQTQGESTSLSLALSLGQSTDSLGTFPPDPHAGGDNPDAHGQGGEAKVEKRPSLVD
RQVSTVEYLPGMLNSSCPKGLLPKFSSWSFVKLGPSKAYNFHRGLDQSGFIPGTNYLMPW
DIVIKTRSEDEVDMDSNSWPAPNKSVPTKRATNVIGRGRRRDDIARAFVGFEYEDSRGRR
FMCSGPEKIMKVMGSGPKESAIKALSSDMPLYILSPSQGRGLKPHYAQLTRLFIVAPDAP
LQIVLTPQVQPGPPPCPVFYPEKQEIPVPPDGLWVLRFPYAYVTDRGPCFPPKENQPLMS
YRVLRGILKAIPQ
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccagggcgctgggggccgtattggcctcggatggcgaagaagcggcctgg
aaggatgaggagatgtgcgtagtggggatattcggaaagacgtcggagttaagcgcgcag
aaacacgccatcatcaacaccttgtgcgacaagccggtctttcccctctacccggggctg
cccggcggccatcatcagggcaacaacttactgcagtgctactacaaccaggatagcaaa
gtcctctacctgctgctcaccgccgtctgcgaccaccagcagctgctgcaagcctgcagg
gccctggccgacgatgtttcccacgccgaggcccatgagttctggaaaggcgaggagaag
ctccactgcatccacctgctctatctcttctcggtctcccacattctccttctggtccac
cccacctgctccttcgacatcacttacgatcgtcttttcagagccttggataccctcagg
caaaaagtccttggctacctgaagaacgcgattaaggattgcccggtggggaaggagtgg
agattgaactgtagaccctgccccccgagactcctgtttattttccagctcaacggggcg
ttgaaggtcgagcccaagggtctcgacccctcaaacctggataagcccaagaaacattcc
ccaaagaggaggctccagcatgccttggaggatcagatttacagaattttcaggaagagc
agggttctgaccaaccagagcattaactgtttgttcactgtccctgccaaccaggcattt
gtttacgtgctggctgggcaggaggacgacccgatcagtatgttgatcgggcagctcaaa
agcacttgtgccatcagggagcaggagtccctccctttgcctggatctcggcgctatcag
atgatgaggcatgtccgccagccatccttcatactggaaagcaacctcaacagttccagt
gggcagctggtggactgcaccctgaaagagttcctgtggcaacacgtggagctggttctg
acaaaaaaaggatttgaggatagtgtagggaggaacccacagccatcacactttgaactt
cctgcctataaaaattggctaacagtggcttcaaaactctatgatgttatgctaagtgga
aaggatgaagaacttggatttcttactggggacctttcctccaagatccaaggtcagctg
aaaggtcttgacgggttcttggatgcagataataagttttcagaaaatcgttgccaaaag
gccctacctctggctcacagtgcctaccagtcaaatctacctcaccattacaccacgact
gtccacaagaaccagttagcacaggccctacgtgtctacagtcaacatgcccgtgggcca
gccttccagaagtatgccatgcagctgcatgaagactgctacaagttttggagtaatggg
caccagttgtgcgaagaaagaagcttaacggatcaacactgtgttcacaaattccatcta
ctgcctaaaccgggagaaaaaccagagcctgacaggaacccacccgtgctgtatcacaac
agccgtgctcgctccaccagctcctgcaactgtggccgcaggcaagcccctcgagatgat
cccttcgacatcaagtcaggcaattacgatttctatcagcttcaagaggagaaatgctgc
gggaaactcgagcacttctattttcctgtcttccaacccagcactcccgacccagctcca
gccaaaaacgaatcaactgtatcatcactgcccccgcaagaaggtgaaggggagaaaatg
aaagaaaaagaggctcagacccaaggagagagcactagtctcagtctggcactcagtctt
ggacaatccacagacagtctgggtacatttccccctgatccccatgcagggggagacaat
cctgatgcgcatggccagggaggggaggctaaagtagaaaagagacccagtcttgtggat
cgacaggtatcaacagtggaatatctgcctggcatgttaaattccagctgtccaaaggga
cttttacctaaattttcaagttggtccttcgtcaagctgggcccttccaaagcttacaac
ttccacaggggcctggaccagagtggcttcattcctggaacgaattacctgatgccttgg
gacatagtcatcaaaaccaggtcagaggatgaagtggacatggacagtaattcctggcct
gctcccaacaaatctgtaccaaccaaacgggctaccaacgtgattggccgaggcaggcgg
agggatgacatcgcgcgggcgtttgttggctttgaatatgaggattcacggggtcgcagg
ttcatgtgctcggggccagaaaagattatgaaggtaatggggagtgggccaaaagagtct
gccatcaaagccctctcctctgacatgcccctgtacatcctgtctccatctcaaggccga
ggtcttaagccgcactacgcccagctcacaaggctgtttattgtggctcctgatgccccg
ttacagattgtactcacgccacaggttcagcctgggcctccaccctgccctgtcttttat
cccgagaagcaggaaatacctgttccacccgatggactctgggtgctccgattcccttat
gcctacgtcacagatcgtggaccctgcttccccccgaaagagaaccagccattgatgagt
taccgagtactacgggggatccttaaggctatcccacagtga
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