Rhincodon typus (whale shark): 109918933
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Entry
109918933 CDS
T06055
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rtp03009
]
109918933 (pdcd11)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
90S particles
Other 90S particles
109918933 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_C
OB_RRP5_4th
TPR_14
TPR_19
TPR_15
ARM_TT21_5th
ARM_TT21_N
TPR_12
NRDE-2
UTP6_C
ARM_TT21
DUF7017
TPR_CcmH_CycH
TPR_6
Motif
Other DBs
NCBI-GeneID:
109918933
NCBI-ProteinID:
XP_048464834
LinkDB
All DBs
Position
20:complement(39863911..39925065)
Genome browser
AA seq
1840 aa
AA seq
DB search
MFPEVVRMAAMDEDFPRGGVQRKPTREKVKRSKEDENLFGVHHDDVRKKQKRKRAELIPV
KAKKQKTKNGGTLQTKQKIKAQILSFKKLNVGMLLLGCVKEVTDFELVVGLPHGLTGYVS
LTNICDAYTKSLREQIDEELSEDLVALSDLYSPGMVVRCAVYELGKTKANRHSLKLSINP
KDVNKALSPGALQAGMLLSGCVSSVEEHGYLVDIGVKATKAFLSHTKTQEYVKNKNQGMP
LRVGQYLTTLVESVKNDGRIAQLSIRHIDVAAATATEDQKWSLSNLLPGLVIRAEIQKVA
CHGLILQFLSGFTGSVDFMHMDPRKVKTCHPGQKVKACILYVQPETKAVHLTLRPAFLQP
GAVLQQPSPHGIGKVLEHCTVRCYHKEAGVIFQLADGTFAYSRKVHLSGTKTPLNPNDFR
EGTKHRCRVIDHSPMEQMVLVSLKKSVLDAPFLKYQDIKPGQLVEGKITSLENYGMNVKL
THHIRGLVPRAHLSDIPLKHPEKLYSVGNLVKCRVLMVNSDTKKLTLTLKKTLVGSKLSV
ITQYKEAVPKRLAHGYVVSVKPFGCIVRFYGDVRGLVPQQELSTHPILFPEKVFYVGQVV
KVAVLKCDPTQEKLLLSLKATQNVGTEADGFTKEIEESSMYPTGKIVDVEVLAKVENGLK
VSILPQHVPAFLPTMHLSDHVSNCRLLAARLQKGDVLSNVMCLSQTNGQIILSRKAAVIA
FAEQGPMPKDVLELQVGTQMPGFVKNIMAYGVFVKFPHGLVGLAPKAAMSDKFVTNTEDH
FVVGQTVVAKVTNLDEEKKRVLLTLKVSECGSAEGAGESLALLSQYCAELEFVRTLMSSR
DSPVVTSLSCLAIGQRLQLVVDRVEDDGTVYFTGTQVTKLTVTASRYHQREVTVSPGQRC
TAVVLFVDLLSSVVHVSLRQELLNANARKLKRISQHLAVVQLVTQDVAVVSLAGTSKLLL
VPVTFHLNDTFHFDSEKLSVGQTISLSLQTAGIEHHGIPLAARGHRKHSRAKRERQMSEG
EEDLIPTVQHALCIGDVISGTVKSVQANCLLIKLEGGVTGFVHASEILDQVPNGSFPSSK
QKVGNVVTAKVIGGREVKSHKFLPITHPNFSATMPELTLRPSKLSGDCEVMYQSEQLADQ
LKSYKPGQVLTCYVSKYNCTKKCLDVEVTPIIQGSVELLLMSQRVKHLKYPKKHFQSGQA
LTATVIAPDRTNTRLSLSLTGACSLDEGSITLGTIEKVTPHLGVTIRLPFGKTGQVGLCD
IADSYKESPLEELTLGRMVRCCVISKNEHELAVSLRSSRVYPERESSINDPEITTAKDLR
KGQLLRGYIKAVGEPGVFVSLCASLSGRVLFNYVTDYYVKDHGIFLASIPKGKLVTVKVL
SINNGQGEVELSLLPQDTGAPDVLSKSLGLPSKQSKMLNDAKGSVLKTSKRKRRGSESEQ
VSSKKLKIKKKQKHSEEADSGVEVYCHEEDSDAEFEGSNTGLSPVSQQQPKPRKTQVPRL
EVSRSFAWDVSLNTISPVTGKHEDISSDSEDDEPEDSKAKLTRREKEVGKRQMEKELMKA
EQQLMDPNRHPQSADDFDRLVLSSPNSSILWTQYMAFHLHTTEIEKARTVAERALKTISF
REEQEKLNVWVALLNLENLYGTEESLMKVFERAVQYSEPLKVFQQLASIYTKSEKYKQAD
NLYNTMLKRFRQESTVWLSYATFLLKQGKTDSTNALLQRALKCLPQKEHVDIIAKFAQLE
FRLGDTERAKAMFESTLSNYPKRTDLWSVYIDMMVKHGSQDEVRHLFERVIHLKLAPKKM
KFFFKRYLEYEKKHGSEERVQAVKEKALEYVESTSLSVDS
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atgtttccggaggttgtgaggatggctgcaatggatgaagatttccctcgtggaggggtg
cagaggaagcccactagggaaaaggtgaagaggagcaaggaagatgaaaacctgtttggg
gtgcatcatgatgatgtaagaaagaaacagaaaaggaagagagcagaattaatccctgta
aaagcgaagaaacagaagacaaagaatggtggtacattgcaaacaaaacaaaagattaag
gcacagattctctccttcaagaaactgaatgttgggatgctcctgctcggctgtgtgaag
gaagtaactgattttgaactcgtcgttggtttaccccatgggctcactggttacgtgagt
ctcaccaatatttgtgatgcatataccaaatccctgagggaacagattgatgaggagctg
tccgaggacctggtagccctctcagacctatacagccctggtatggttgtacgttgtgct
gtctatgagctgggaaagacaaaagccaaccgccacagcttgaaactctccattaacccg
aaggatgtaaacaaggcattgtctcctggggcactgcaagctggcatgttgctttctggc
tgtgtgtccagtgttgaagaacatggctatctggttgacattggagtcaaagccaccaaa
gctttcctctcgcacacgaaaacccaggagtacgtaaagaataaaaatcaaggcatgcct
ctccgtgttggtcagtatctaaccactcttgtggagtcggtgaagaatgatggtcgcatt
gcccaactctcgatccgtcacattgacgttgctgcagcgacagcaactgaagatcagaag
tggagtctctccaatctgctccctgggctggtgatcagggctgaaattcaaaaggtggca
tgccatggtttgattctgcagttcctgtctggtttcaccggttctgttgatttcatgcat
atggatccacggaaagtcaagacctgtcaccccgggcagaaggtgaaagcttgtatttta
tatgtgcagccggaaacgaaggctgtgcacctgacactgcggcctgccttcctgcagcca
ggggcagtgttacagcagccaagcccacatgggatcgggaaggttcttgagcactgcact
gtgcggtgctaccacaaagaagctggtgtcatctttcagctggctgatgggacctttgcc
tattcacgtaaagttcatctatctggcactaagacgcctcttaaccccaatgacttccgt
gaaggtaccaagcacaggtgcagggtcattgaccacagcccaatggaacagatggttttg
gtgtctctgaaaaagagtgttctcgatgccccattcttgaagtaccaagacatcaaacca
ggacaactggtcgagggtaaaatcacctctctggagaattatgggatgaatgtgaagcta
acgcaccacattcggggactggtgcctcgggcacatctgtcagacattcccctgaagcat
ccagaaaagctgtacagtgtaggaaatctggtgaagtgcagggtactgatggtaaacagt
gacaccaagaaacttaccctgactctgaaaaagacgctggttggttcaaagctttctgtt
attacccagtataaggaagctgttcccaagcgactggcccatggttacgttgtctctgtg
aagccctttggctgcatcgtccgcttctatggtgacgtgcgagggctggtcccacagcag
gagctgagcacccatcccatcctctttcctgagaaggtcttctatgttggtcaggttgtc
aaggttgctgtcctaaagtgtgacccaactcaggagaagctgctgttgtccctgaaagcc
acacagaacgtgggaaccgaagctgatggtttcactaaggaaattgaagaatcttcaatg
tacccaactggcaagattgtggatgtggaagtcttggcgaaggtagagaatgggctaaag
gtctccattctgccacagcatgtacctgcctttctcccaacgatgcacctctcagaccat
gtctcaaattgtcggcttcttgctgcgaggctgcagaagggtgacgtcctctccaatgtc
atgtgtttaagccaaacaaacggccaaattattctttctagaaaagctgcagtgatagct
tttgctgaacaagggccaatgccaaaggatgtgttggaactccaggtgggtacacaaatg
ccgggttttgtgaagaacattatggcgtatggagtgtttgtcaaattcccacatggactg
gtcggcctggctcccaaagctgctatgtctgataagtttgtcacaaacacagaggatcat
tttgtggtgggccagacagtggttgccaaggttacaaacctggatgaggaaaagaagcga
gtattactgactctgaaagtgtctgaatgtggatctgcagagggtgctggtgaaagcctt
gcgctcctgagtcagtactgtgctgaactggaatttgtcaggaccttgatgagcagcaga
gattctccagttgttaccagtctgagttgcctggccatagggcagagactccagctcgta
gtggatagagtggaggatgatggcacagtatacttcactggtacacaggttaccaagctg
actgttacagccagtcgctatcaccagcgggaggtgactgtgagcccaggacaacggtgc
acggcagttgtgctgtttgtagatcttctctcatccgtcgttcacgtgtctctccgtcag
gagctgctaaatgccaatgcgagaaagttgaaaagaatttcccagcaccttgctgtggtg
cagcttgtgacacaggatgttgccgttgtttcgctggccggcacttcgaagctgcttctc
gttccagtcacattccatctaaatgacaccttccactttgactcggagaaactctctgtg
gggcagaccatctctctgtcgctgcagacagctggaatagagcatcatgggatcccgctt
gctgcgcgtggacacaggaaacacagcagggccaagcgagagcgccaaatgtcagaagga
gaagaggatttgatacctacagttcagcatgcactgtgtattggggatgtaataagtgga
actgtgaaatcagtgcaggcaaactgcttgctgattaagttagaaggcggtgtgactgga
tttgttcatgcttcggagatcctcgaccaggttcccaacggctccttcccatcatcgaaa
cagaaagttggcaatgtcgtaacagcaaaagtcattggagggagagaagtaaagtctcac
aagtttttgccgatcacacacccgaacttttcagcgactatgccggagttaacactgcga
ccaagcaagctgtcaggagactgtgaggtcatgtaccagagtgagcaattagcagaccag
ctcaaatcctacaaacccggccaagtgttaacgtgttatgtgtcgaagtacaactgtacc
aagaaatgtctggatgttgaagtgactccaatcattcaagggagtgtggagctgctgctg
atgtctcaaagagtcaagcacttgaagtatcccaagaaacattttcaatctggtcaagcc
ttaacagcaacagtgatcgccccagacagaacaaacactcgtctcagcctctctctcaca
ggtgcatgctctctggatgaaggttcgataacactgggcacaatcgagaaggtcactcca
cacttgggggtcaccatcaggctcccttttggaaagactggtcaagtggggctatgtgat
atagcagattcgtacaaagagtcaccattggaggagctcaccctgggccgcatggtcagg
tgttgtgtcatttcaaagaatgagcatgagttggcagtttctctcaggagctcgagagtg
taccctgagcgtgagtcttcaataaatgacccagagattacaacggccaaggatcttcgg
aaggggcagctccttagaggttatataaaggctgttggagagcctggagtctttgtcagc
ctctgtgcttcgctgtcaggccgtgtcctcttcaattatgtcacagattactatgtcaag
gaccatggaatcttcctggcaagcatcccaaaaggaaagctggtgacagtcaaagtactg
agcataaataatggacaaggtgaagtggagctgtcactcctccctcaggacacaggagct
ccagatgtgctgtcaaagtcccttggcttaccatccaagcaatccaaaatgctgaatgat
gcaaaaggatcggtcttaaaaacctccaaacgcaagagaagaggttcggagagtgagcag
gtttcctccaaaaaattgaaaataaagaagaaacagaagcattcggaggaggcggacagt
ggagtggaggtatactgtcatgaggaggacagcgacgctgaatttgaagggagtaacact
ggattatcacctgtatcccagcagcagccaaaacccagaaaaactcaggttcccaggcta
gaagtgtcacgcagctttgcttgggatgtgagtttaaacaccatctctcctgtgactggg
aaacatgaagacattagctcagacagtgaggatgacgagcctgaggactccaaggccaag
ctgacgaggagagagaaggaagtggggaaacggcagatggaaaaagagctgatgaaggct
gagcagcagctgatggaccccaatcgacacccacagtcagctgatgactttgaccgtctg
gtcctgagctcccccaacagctccattctctggacacagtacatggcattccacctgcac
accactgagattgagaaggcacgaactgtggcagagagagccctgaaaaccatctcgttc
agagaggagcaggagaaattgaatgtctgggttgcactgctaaatctggagaatctctat
ggcacagaagagtcgctgatgaaagtgtttgaacgtgctgttcagtacagtgagccactg
aaggtcttccagcagctggccagtatctacaccaaatctgagaaatacaagcaagcagac
aacctgtacaacaccatgctgaaacggtttcgccaagagagcactgtctggctcagttac
gccaccttcctcctcaagcagggaaagactgactctaccaatgctttactgcagagagca
ctcaagtgtctgccccagaaagaacatgttgacataattgccaagtttgcacagctggag
tttcgtcttggggacacagaacgggctaaggcaatgtttgagagcacactgagcaattac
cccaaacgcacagacctatggtcagtctatattgacatgatggtgaagcatggtagccag
gacgaagtcaggcatctctttgaaagagtcatacacctgaagctcgcgccaaagaagatg
aagttcttcttcaaaaggtatctagagtatgagaagaaacacgggagtgaggagagggta
caggccgtgaaggagaaggcgctggaatatgttgagtcgacgagcttgtctgtggacagc
taa
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