Rhincodon typus (whale shark): 109918978
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Entry
109918978 CDS
T06055
Name
(RefSeq) transcription factor Sox-1a-like isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109918978
Transcription factors [BR:
rtp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109918978
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
109918978
NCBI-ProteinID:
XP_020374519
LinkDB
All DBs
Position
6:95864565..95865617
Genome browser
AA seq
350 aa
AA seq
DB search
MYSLMMEGELQSPGHPVSAPSTGTSVPTGGTNGKLSGERVKRPMNAFMVWSRGQRRKMAQ
ENPKMHNSEISKRLGAEWKLMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLLK
KDKYSLPAGLLSPGPGAMSSPPGLNQRLDGAGAYAHMNGWANGAYPGSAAAAAAAAAVMM
QDPLAYSQHPALAAAGTAAAGGAGGGGGGGSAAGGNGAGGTAGHHHHHHHHHHPQQLHRY
DMSLQYSPIPGTQGYMSGSPSYSPIPSGYSHQGATNLSLGSMVKSEPSPSPPVSSHSRPP
CSGDLREMISMYLPTGGEAGDPSQNRLLPLAQHYQSPSTAVNGTIPLTHM
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcttgatgatggagggcgagctgcagtccccgggacacccggtcagtgccccg
agtaccggaacctcggtgcccacaggcggcactaacgggaaactgagcggcgagcgggtc
aagcggccgatgaacgcgttcatggtgtggtcccggggtcagcgccggaagatggctcag
gagaacccgaagatgcacaactcggagatcagcaagcgcctgggggctgagtggaaactc
atgtccgaggccgagaagcgcccgttcatcgacgaggccaaaaggctgcgggcgctgcac
atgaaggagcacccggattataaataccggccccgccgcaagaccaagaccctgctcaag
aaggacaagtattcgctgcccgccggcttgctctcccctggccccggggcaatgagctcg
cctccaggcttgaaccagcggctggacggagccggcgcctacgctcacatgaacggctgg
gcgaacggcgcttacccgggctcggcagcagcggcggcggcggcggcggcggtcatgatg
caggacccgctggcttacagccagcacccggcgctggcggcggcaggaacagcggctgcg
ggaggagcaggaggcggaggaggaggagggagtgccgccggtggtaacggcgccggtggg
acagcgggtcaccaccaccatcaccatcaccaccaccacccgcagcaattacaccgctat
gacatgtccctccagtacagccccatccccggcacacagggctacatgagcggctccccc
tcctacagccccatcccgtccggttacagccaccagggagccaccaatctctcactgggc
tcgatggtcaagtcggaaccgtcccccagccctccggtcagctcgcattcccgaccccct
tgttccggggacctgagagagatgatcagcatgtacttgccgacaggaggagaagccggg
gacccatcccagaacagactgcttcccctggctcagcactaccagagccccagcacggct
gttaacgggaccatcccattaactcacatgtga
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