Rhincodon typus (whale shark): 109919153
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Entry
109919153 CDS
T06055
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03013
Nucleocytoplasmic transport
rtp03015
mRNA surveillance pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109919153 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
109919153 (ddx39b)
03015 mRNA surveillance pathway
109919153 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109919153 (ddx39b)
03041 Spliceosome [BR:
rtp03041
]
109919153 (ddx39b)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109919153 (ddx39b)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109919153 (ddx39b)
Spliceosome [BR:
rtp03041
]
Complex C
Other components
EJC/TREX
109919153 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109919153 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109919153
NCBI-ProteinID:
XP_048472603
LinkDB
All DBs
Position
35:complement(18485237..18526268)
Genome browser
AA seq
471 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAAGDASEVPLKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQISVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEELLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYRAGTLKSLYSAVVVPLLGEMLNRGTAHILRRINEPFNSAANFVLTGTL
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaacgatgttgacaatgagctcttggactacgaggatgacgaggtcgagaac
caagcagccggtgacgcctcggaggtgccgctgaagaaggatgtgaagggctcgtatgtg
tctatacacagttctgggttccgagacttcctgctgaaaccagagttactgcgcgccatt
gtcgactgtggttttgagcacccctctgaagtacaacatgagtgcattccccaagcaatt
ctgggcatggatgtcttgtgccaggccaagtctggcatgggaaaaacagcagtgtttgtc
ttggctactcttcaacaactggaacctgtcaccggacaaatttcagtcctggtgatgtgc
cacactcgagaactggcattccaaatcagcaaggaatacgaacggttctccaaatacatg
ccaagcgtgaaggttgcggtgttttttggtgggctctccattaagaaggacgaggagttg
ttgaagaagaactgcccgcacattgtggtgggcacccctggcaggatcctggcactggct
cgcaacaagtctctgaaccttaaacacatcaagcacttcatcctggacgagtgtgacaag
atgctcgagcagcttgacatgcgtcgagacgtccaggagatctttcgcatgactcctcat
gagaaacaggtcatgatgtttagtgccaccttaagcaaggagatccgccccgtctgtcgc
aagttcatgcaagacccgatggagatctttgtggacgacgaaaccaagctgaccctgcac
gggctgcagcagtactacgtgaagctgaaagacaacgagaagaaccgcaagcttttcgac
ctgctggatgttctggagttcaaccaggtggttatttttgtgaagtcagtgcagaggtgc
atcgccttggcacagctcctagttgagcagaacttccctgccatagccattcaccggggc
atgcctcaggaggagagattatctcgataccagcagttcaaggatttccagcggcggata
ctggtcgccaccaatttatttggccgtgggatggacattgagcgggtcaacattgtattt
aactatgatatgccagaggattctgacacctacttacacagggtggccagagctggccgt
ttcggtaccaagggactggctatcacgttcgtgtcggatgagaatgacgccaagatcctc
aatgacgtgcaggacaggtttgaagtgaacatcagcgagctgcctgacgagattgacatt
tcttcatacagagctggaacattaaaatctctgtacagtgctgtggtggtgccacttctg
ggtgagatgttaaacagaggcactgcccacattctcaggaggataaacgagcccttcaac
agtgcagcaaactttgttttaaccggtaccttatga
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