Rhincodon typus (whale shark): 109919165 Help Entry 109919165         CDS       T06055                                  Symbol sympk Name (RefSeq) symplekin isoform X1   KO K06100   symplekin Organism rtp  Rhincodon typus (whale shark) Pathway rtp03015   mRNA surveillance pathway rtp04530   Tight junction Brite KEGG Orthology (KO) [BR:rtp00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     109919165 (sympk)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04530 Tight junction     109919165 (sympk)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:rtp03021]     109919165 (sympk)    03019 Messenger RNA biogenesis [BR:rtp03019]     109919165 (sympk) Transcription machinery [BR:rtp03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      109919165 (sympk) Messenger RNA biogenesis [BR:rtp03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      109919165 (sympk)     U7-dependent histone pre-mRNA processing factors      109919165 (sympk) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N Motif Other DBs NCBI-GeneID:  109919165 NCBI-ProteinID:  XP_020374728 LinkDB All DBs Position 39:complement(9738744..9780551) Genome browser AA seq 1466 aa AA seqDB search MRSAGLGRAERGRPRASGLAMAASAPAAESGSSRRCLATQYFNEEENNAIESLTTSERVV DLLNQAALIVTDNKISVLKQVQELILNKDPTLLDNFLDEIIAFQSDKSIDVRKFVIGFME EACKRDNELLPKLIANLNMLLKDENVNVVKKVILTMTQLYKVALQWMVKSKVISEVKEAC WDMVSNMQDDIVLMLDSDNDGIRTHAIKFIESLIITLSPRTPDSDVPKRQENDISLDRIV KDHSYINAGSLQQEGKMALDQLLKFMVHPAISSINLTVALGSLATIARQRPMYMSEVIQA YETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPSSVEFHAQITTLLLDLGTQQQEIAR NMPNLKDMRKRRGEDTEQGMKKIKIEPLGEDDEDKDLEQVAASTSKPSSSQSTQSAIDVT AQFLMPLLSPENVANLVLISMVYLPDVMPASFQATYTPVESAGTDAQIKHLARLMATQMT SAGLGPGVDQMKLQSDDDPKQGKDVKNEGLVIKRRYSTLRHGQAISVVGAPFTQPTKEEE MQAKRRVEPILQSSQARPGQSGRKKVFRLGDVVQQLPADKIDKLKLGAVQRILKAEKAVA RGGAGAIRVKILARLVTQFDGKLKGKMMDFILEDIRNRVDLAFAWLYQEYNLYLEKWPNG NLENYDECLTSLLSGLQEKPDQKDGLFTKLVLEAPCITDSALEVIRRYCEDKTRIYLGMS TLRDLIFKRPSKQLQYLHVLLDLSSHEKDKVRSQALMFIKRMYDKEQLRDYIEKFALNYL QLLVHPNPPSILFGADKDTEVAAPWTEEMVKQCLYLYLALLPQNHKLIHELAAVYTEAIA DIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHILTDKVPPSPELVKRV RDLYHKRVPDVRFLIPVLNGLEKKEVTQALPKLIKLNPIVVKEVFNRLLGTTHVGEGVSA AISPLTPGDLLIALHNIDSTKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLP MLLMRTVIQSLTMYPRLGGFVMNILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVLLQ LPPAQLANVFEKCPELREPLLTHVRSFTPHQQNHIPKSIMTVLEANLKPDVEAVEPKPAG EEEVQHLTIAHAQKDLITMRLAQEKALKRKLEEEQKLKQQQLAAQLHPLQTTLAPPSLTA LTPAPVIQTAPAPPPQNQITPAPSPSIQSVPAPPNLIVPAPPVQTTAAPPSLITPAPPSL IAPSPAVKTIPAPPSLIAPGPSSQAASKSPTQAGLAAPSQAVPSQVTTAVMLAPKDEPME TNSSVSDTTVNRETENPTIIIDVKEEEEGPMALDETSHGMVVMDTDSAPREHNGQQPVLH QVGHLVARDHGDVTEQVILVRDEPMPAEKPAPTGEPANPPEEPMEQGTEGGVSEEKVGES AEKEQAVVNDTQQPVTKRKSALRKSS NT seq 4401 nt NT seq  +upstreamnt  +downstreamnt atgcgcagtgccgggctgggtcgagccgagaggggcaggcctcgggcttcaggcttggcg atggccgccagcgccccggccgcggagagcggctcctcccgccgctgtctcgccacccag tattttaatgaggaggagaataacgcgatcgagagcctgactacgagcgagcgggtggtg gatctgttgaatcaagcagcactgattgtcactgacaacaagatcagtgttctcaaacag gttcaggagctgattttgaacaaggatcctacgcttcttgacaactttctggatgaaatc attgcatttcagtcagataaatccatcgatgttcgcaaatttgtcattggatttatggag gaggcatgcaagcgggataatgagctgctgccaaagctaattgcaaacctcaacatgttg ctaaaggatgagaatgttaatgttgtgaagaaggttatattgaccatgacacagttatac aaggtggcactccagtggatggtaaagtccaaggttatcagtgaagtcaaggaggcatgc tgggatatggttagtaacatgcaggatgatattgtcttaatgttggactctgacaatgat ggaatccgcactcatgccatcaagttcattgaaagtttgattatcacgctgtcgcctcgc actccagattcagatgtccccaagcggcaggagaatgatatcagcttggaccgcatagtg aaggatcactcttacatcaatgccggcagtcttcagcaagaaggtaaaatggcactggat caactcctgaagttcatggtgcatcctgccatttctagcatcaacctgactgttgcattg ggctccttggcaaccatcgctaggcaacggcccatgtacatgtctgaggtcatccaggcg tacgagacccttcatgcaaatctgcctccaaccctggccaaatcgcaggtcagcagcgtg cggaagaacttgaaactgcacttgctgagcgtgttgaagcacccgtcctcggtggagttc cacgcccagatcaccacgctgcttttggaccttggcacgcagcagcaggagattgctcgc aacatgccgaacctgaaggatatgaggaaacgacgtggagaggacactgaacagggcatg aagaaaatcaaaatcgagccgttaggtgaggatgatgaagacaaggatctcgaacaagta gcagcctccacttctaaaccatcttcatcccagagtacacagtctgccattgatgtcaca gctcagttcctgatgccgctgctttcaccagagaacgtagcgaatctggttttgatcagc atggtgtaccttccagatgtgatgccagcctccttccaggccacctatacaccggtggaa tcagcaggaacagacgcccagattaagcacttagctcggctcatggccacacagatgacg tcagcaggtctcgggccaggagttgaccagatgaagctccaatcagacgatgacccgaaa caggggaaagatgtgaaaaatgaggggctggttatcaaacggcgttactccacgttgcgg cacggccaagctatctctgttgtcggagcgccttttacacagcccaccaaagaagaggag atgcaagcgaagcgccgagtggaacccattttgcaatcaagccaggcaaggccggggcag agtgggcggaagaaggttttccgcctgggagacgtcgtccagcagctgccagcagataag attgacaagctgaagctcggagctgtgcaacgcatcctcaaagcagaaaaagcagtagcg cgaggtggagctggggcgattcgtgtgaagattcttgcccgtctcgtgacacagtttgat gggaagttgaaaggcaagatgatggatttcatcctggaggacatccggaaccgtgtcgac cttgcttttgcttggctttaccaagagtacaacctgtaccttgaaaagtggcccaatggc aatctggagaattacgatgaatgtttgaccagcttactatcagggctgcaggagaaacca gaccagaaggatgggctgtttaccaagctggtcctagaagctccctgtataactgatagt gcattagaggtgattcgccggtactgcgaggataagactcgcatctaccttggaatgtcg acactaagggatctgatcttcaagaggccttcaaagcagctgcagtacctccatgtgctg cttgacttgagctctcatgagaaggataaggtccgctcccaggcgctgatgtttatcaaa agaatgtatgacaaggagcaactacgtgactacatcgagaagtttgccctgaattacttg cagctgctggttcatcctaacccgccctccatcctcttcggggctgacaaggacaccgag gtggcagccccttggacggaggagatggtgaaacagtgtctctacctgtaccttgctctg cttccccagaaccacaaacttattcatgaacttgctgctgtctacaccgaggcaatcgct gatattaagcgcacagtgttgcgtgtcatcgagcagccgatccgagggatgggaatgaac tcgcctgaactgcttctgttagtggagaactgtccaaaaggagcagaaacccttgtgact cgttgcctacacatcttgacagacaaagttcctccatcacctgagctagtaaaacgagtt cgcgatctctaccacaagagagtcccagatgtccgcttcctgatcccggtgcttaatggc ctcgagaagaaagaagtaacccaggcactgcccaaattgattaaactcaatcccattgtg gtgaaggaggtttttaaccggctactggggaccacacacgtaggtgaaggtgtgtcagcg gcaatttcacctctgactccaggtgacctgctgatagccctgcacaacattgactccacc aaatgtgacatgaagtccataattaaagctacgaacctgtgcttcgcagagaggaatgta tacacatcggaggttcttgctgttgtgatgcagcagctgatggaacagagcccactcccc atgttgctgatgcggactgtcattcagtcgctgacaatgtacccccgccttgggggtttt gtcatgaacatcctgtctcggctgataatgaaacaggtttggaaataccccaaagtctgg gaaggcttcattaagtgctgccagcgaacgaaacctcagtccttccaagtgctactgcaa ctcccacctgctcaactcgccaacgttttcgagaagtgcccggagcttcgtgagccactc ttgacacacgtgcgctctttcacaccgcaccagcaaaatcacattccgaagtcaataatg actgtgctggaggccaacttgaagccagatgtggaggctgtggagccaaagccagcgggt gaggaggaagtgcagcatctgaccattgcacatgcccaaaaggatctgatcaccatgcgg ctggcacaagagaaagctttgaagagaaaattggaggaagagcagaaactcaagcagcag caactggctgcccagttacacccactgcagaccaccctggcccctccaagcctaactgcc ctgacccctgcccctgtaattcagactgctcctgctcctcctcctcagaatcagattacc cccgccccctccccctcgatccagtctgtcccggcccctccgaacctgatagtcccggct cccccagtccagaccactgctgcacctccgagcctgattaccccggcccctcccagcttg atcgccccgtcccccgcagtcaaaaccatcccagctcctcctagtctgatcgccccaggc ccttctagccaggcagcctccaagtcccccacccaggctggattggcagcacccagtcag gcagtcccaagccaagtgaccacagcagtaatgttggcaccaaaggacgagccaatggaa accaacagcagtgtttctgacacgactgttaacagagagaccgagaatccgacaatcatc atcgatgtgaaggaagaggaggaggggccgatggctttggatgagacgtcccatgggatg gttgtcatggatactgactcggcccctagggagcacaacggtcagcaaccagtcctccac caagtgggacatttggtagcacgggaccacggggacgtcacggagcaggtgatcctcgtc cgggatgagccaatgccggcggagaagccggcgcccaccggcgagccggctaacccaccg gaggaaccgatggagcaaggaacggagggtggggtgtctgaggaaaaagttggtgaaagc gcagagaaggagcaggccgtagtcaatgacacacagcaacccgtcaccaaacgcaaatct gctttgaggaaaagcagctaa

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