Rhincodon typus (whale shark): 109919219
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Entry
109919219 CDS
T06055
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109919219 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109919219 (prpf40a)
Spliceosome [BR:
rtp03041
]
Complex A
U1 snRNP components
U1 related factors
109919219 (prpf40a)
Complex B
109919219 (prpf40a)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DUF4936
Motif
Other DBs
NCBI-GeneID:
109919219
NCBI-ProteinID:
XP_048454532
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Position
7:complement(49889180..49935051)
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AA seq
880 aa
AA seq
DB search
MIPPPFMGPPGMPPPFPPMGMPPIGQRPPNMPPLPPGMMPPMIPPMAGPPMGQMPGMMPP
MMTGMMMSRMPTAPIQASAPPPGVSTTVTEVTSASPATIVQVTNPTVSSVQQISTTNESS
GEEQTKKKSVWTEHKSPDGRTYFYNSETKQSTWEKPDELKSHAEQLLSKCPWKEYKSDTG
KPYYYNSQTKESRWTKPKELEELEEMIRAEEENGVKEASLSTVSTSVQEATTTTPVEVTE
NEITTTEDHEKEQTTAVEQSEPEPVEIISQPVEEVTKQEIQENDIPKKEEEVKKEPVRKT
YTWNTKEEAKHAFKELLKEKGVQSNASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKIQ
TEKEEKEEARLRYKEAKENFQRFLENHEKMTSTTRYRKAEQMFGETEVWTAVPERDRQEI
YEDVLFFLAKKEKEQARQLRKRNTQALKNILDNMANVTYCTTWSEAQQYLMDNPTFAEDE
ELQNMDKEDALVCFEEHIRALEKEEEEEKQRGLLRERRRQRKNREAFQTFLDELHESGHL
HSMSTWMELYPAISADIRFSKMLGQPGSTPLDLFKFYVEDLKARFHDEKKIIKDILKDKG
FVVEVNTTFEEFGTVISSDKRAATLDAGNIKLTFNSLLEKAEAREREREKEEARKLKRKE
TAFKSMLKQATPPLEPESNWDEVRERFVNESAFEDITVESERKRLFKEFLQILEHECQHH
HSKSKKHSKKSKKHHRKHSRSRSASESEDDDYHHSKKKKRSHSKSPSDRTSSEESERSYK
KSKKHKKKGKKRRRKSVTPESEGERERERERERDRDRREKERSRDDEKERNRHRSQSKHK
SPRKATNKDTANWETSDSELSEGELEKRRRTLLQQLDDDQ
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgattccaccaccatttatgggaccgcctggtatgcctccaccgtttccacctatgggc
atgccacccattggccagagaccaccaaatatgccacctttgccaccaggtatgatgcca
ccaatgattcctccaatggctggaccaccaatgggacagatgcctggaatgatgcctccc
atgatgacgggaatgatgatgtctcgtatgccaactgctcccatacaagcaagtgcacct
ccgccaggagttagcaccacagtgacagaagtaacatcagcttctccagccactatagtt
caggttacaaatcctacagtttctagcgttcagcaaatttctactactaatgaatcttct
ggagaagagcagaccaaaaagaaatctgtttggactgaacacaaatctccagatggaaga
acatacttctacaattctgagacaaaacagtcgacgtgggagaagcccgatgaactgaaa
tcacacgcagagcaattattatcaaaatgcccttggaaagaatataaatctgacactggg
aaaccctattattataattctcaaacaaaagagtctcgatggacaaaacccaaagaattg
gaggaactggaagaaatgatcagagctgaggaagaaaatggtgttaaggaagcttctctg
tccactgtgtcaacttctgttcaagaggcaacaacgaccaccccagtggaggttactgag
aatgaaattacaaccactgaagatcatgaaaaggaacaaacaacagctgttgagcagtct
gaacccgaacctgtagagatcatttctcagccagtagaagaagtaacaaagcaagagatc
caagaaaatgatattccaaaaaaggaggaggaagtgaaaaaagaaccagtgaggaagacc
tatacctggaacacaaaagaggaggcaaaacatgcatttaaagagctactgaaggaaaag
ggtgtccagtcaaatgcctcatgggaacaagcaatgaaaatgattataaatgatcctagg
tatagtgcattaccaaaacttagtgaaaagaagcaagcattcaatgcgtataaaatacaa
accgaaaaagaggaaaaggaagaagccagactccgctataaagaagcaaaagaaaacttt
cagcgatttcttgaaaaccatgagaaaatgacatctactaccagatacaggaaagctgaa
cagatgtttggagagacagaagtgtggacagcagttcctgagcgggatcgacaggagatc
tatgaagatgttttgtttttcttggccaaaaaagaaaaggaacaagcaaggcaactaaga
aagagaaatacccaagcgctgaaaaatatccttgacaacatggctaatgtaacatactgc
accacgtggtcagaggcacagcaatatctaatggataatccaacttttgcagaagatgaa
gagttgcaaaatatggataaagaagatgcccttgtttgttttgaagagcatataagagca
ttagagaaggaggaagaggaggaaaaacaacgaggtttgcttcgagagcggagaaggcag
cgcaaaaatagggaggcctttcaaaccttcctggatgagttgcatgaaagcgggcatttg
cattccatgtctacctggatggagttgtatcctgctatcagtgctgatattagattttct
aaaatgttgggccaacctggatctactccacttgatcttttcaaattttatgtggaagat
ctaaaagcacgcttccatgatgaaaagaaaataataaaagatattttgaaggataaaggt
tttgtggtagaagtcaatactacatttgaagaatttggtacagtcattagttcagataag
agagcagctacacttgatgctggtaacattaaacttacttttaacagtttgttagaaaaa
gcagaagctcgagaacgtgaaagagaaaaggaagaagctagaaaactaaagcgaaaagaa
actgctttcaaaagcatgttaaagcaagccactcctcctctggaaccagaatcaaattgg
gatgaggttcgagagaggtttgtaaacgagtctgcttttgaagacattactgtcgaatct
gaaagaaaaagacttttcaaggaatttctacaaattcttgagcatgaatgccaacatcat
cattcaaagagcaaaaaacattccaagaagtcaaaaaagcatcacaggaagcattctcgt
tctcgttcagcctcagaatcagaagatgatgattatcaccattcgaagaaaaagaagcgt
tcccattcaaagtccccttcagacagaacctctagtgaagagtcagaacgaagttacaaa
aagtccaaaaaacacaagaaaaagggcaaaaagagaagacgcaaatctgttactcctgaa
tctgaaggagaacgagaacgtgagcgggaaagagaaagagaccgggatagacgagagaaa
gaaagaagcagggatgacgagaaagaaagaaatagacacagatcacagtcaaagcacaaa
tcacccagaaaagccaccaacaaagatacagcaaattgggaaacctctgatagtgagcta
agtgagggggaactggaaaaacgaagacgaactctcttgcagcaacttgatgatgaccag
taa
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