Rhincodon typus (whale shark): 109919258
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Entry
109919258 CDS
T06055
Name
(RefSeq) lissencephaly-1 homolog
KO
K16794
platelet-activating factor acetylhydrolase IB subunit alpha
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp00565
Ether lipid metabolism
rtp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09100 Metabolism
09103 Lipid metabolism
00565 Ether lipid metabolism
109919258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109919258
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtp04147
]
109919258
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
109919258
Exosome [BR:
rtp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
109919258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
EIF3I
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_Nup120_160
Beta-prop_DCAF4
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_DCAF12
Beta-prop_RIG_2nd
eIF2A
Beta-prop_RIG_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
Nucleoporin_N
Beta-prop_NUP159_NUP214
Pox_A_type_inc
PROPPIN
Motif
Other DBs
NCBI-GeneID:
109919258
NCBI-ProteinID:
XP_020374832
LinkDB
All DBs
Position
26:complement(11052915..11087554)
Genome browser
AA seq
372 aa
AA seq
DB search
MNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEFTSAGPLGQKRDPKEWIPRP
PERYSLSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF
DQNGKLLASCSADMTIKLWDFQSFECIRTMHGHDHNISSVAIMPNGDHIVSASRDKTMKM
WEVQTGYCVKTFTGHREWVRMVRPNQDGTLLASCSNDQTVRVWVVATKECKAELREHEHV
VECISWAPESSYPTILEATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHD
NWVRGTLFHPGGKFIVSCADDKTIRVWDYKNKRCMKTLNAHEHFVTSLDFHKTGPFVVTG
SVDQTVKVWECR
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagaattagataagaaatatgctggactgctggagaaaaaatggacctctgtg
ataagattacagaagaaggttatggaattagaatccaaactgaatgaggcaaaagaggag
ttcacttcagccggccctctgggtcaaaagcgtgacccaaaagaatggatccctcgtcct
ccagagagatactctctgagtggacacagaagtccagtcacacgggttattttccatcca
gtcttcagtgttatggtatcagcctctgaagatgccacaataaaggtctgggactatgag
actggagattttgagcgtaccctaaaaggtcacacagactctgtacaagatatctccttt
gatcagaatggcaaactgctggcatcctgctctgctgatatgaccatcaagctttgggat
tttcagagctttgaatgcattcggaccatgcatggccatgatcataatatttcatcagta
gctattatgcctaatggagatcacatagtgtctgcttcaagggataaaaccatgaaaatg
tgggaggtgcaaacaggttattgtgtgaagactttcacgggacatagagaatgggtgcgc
atggtccgacccaaccaggatggtactcttctggccagctgttccaatgatcagactgtc
cgtgtatgggtagtagctacaaaagaatgcaaagctgaacttcgagagcatgaacatgtc
gtagaatgtatttcctgggcaccagagagttcttacccaaccattttggaagcaactgga
tctgagactaaaaagagtggcaagcctggacctttcctgctgtcaggatccagagacaag
actattaagatgtgggatattagcattggaatgtgccttatgacactggttggccatgat
aactgggtacgtggtaccttgtttcatcctggaggcaagtttattgtgagctgtgctgat
gacaaaaccattagagtatgggactacaagaacaaacggtgcatgaagaccctgaatgca
catgaacactttgttacctctcttgatttccacaagacgggtccatttgtcgttactgga
agcgtagatcaaacggtaaaggtctgggagtgccgctga
DBGET
integrated database retrieval system
