Rhincodon typus (whale shark): 109919349
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Entry
109919349 CDS
T06055
Symbol
atg4da
Name
(RefSeq) cysteine protease atg4da
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04136
Autophagy - other
rtp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109919349 (atg4da)
04136 Autophagy - other
109919349 (atg4da)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rtp01002
]
109919349 (atg4da)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109919349 (atg4da)
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109919349 (atg4da)
Peptidases and inhibitors [BR:
rtp01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
109919349 (atg4da)
Membrane trafficking [BR:
rtp04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
109919349 (atg4da)
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
109919349 (atg4da)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
HJURP_C
Motif
Other DBs
NCBI-GeneID:
109919349
NCBI-ProteinID:
XP_048473748
LinkDB
All DBs
Position
38:complement(2004297..2073984)
Genome browser
AA seq
417 aa
AA seq
DB search
MVGGAEAVHLAIGSGVETAGGLEQHQIRTLAVCGKAAMSPDGSTEAWRSRPNEFGVWYWQ
LWFEADICLSDWTWPDVLLSVESEAESRSPSKSNTLNWPIFSEVLGSQLDRSRSFRDTQR
AAVKQRPAQAQRQTNTDQYIMDKEELEHRKIISWFGDYPKAPFGVHQLVEHGKRSGKKAG
DWYGPSIVAHIIKRAVERAEDSESLNIAVYVAQDCTVYKGDVVNLCETQLKGEKVPGLDW
KSVIILVPVRLGGENLNPVYMQCVKEILKLECCIGIIGGKPKHSLYFIGFQDDFLLYLDP
HYCQPVVDVTKHDFELESFHCISPRKLSFSKMDPSCTIGFYAKTKEDFENLCKTVTMVLG
SSSLKEKYPIFTFARGCAQDYGLDELCTLKPDKTVLISKSGRPGKSRQSSTDEFVFL
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggttggtggggccgaggcagtacatttagcaatcggcagcggcgtggaaacggctggc
ggcctggagcagcaccagatcaggaccctggcggtctgtggcaaggctgctatgagccca
gatgggagcacagaggcatggagatcgaggccaaatgagtttggtgtttggtattggcag
ctctggtttgaagctgatatttgtctttcagactggacatggcctgatgttttgctctcg
gttgaatccgaagctgaatccagatcaccatccaaatcaaacactttaaactggcccatc
ttctctgaggtccttggctcacaactggatagaagtagaagcttcagggatacgcagaga
gctgctgtgaaacaaagacctgcacaagcacagagacagaccaacactgaccagtacatt
atggacaaagaggaactggagcaccgaaaaattatctcctggtttggagattaccccaaa
gctccatttggagtccatcagttagtggaacatgggaagagatcagggaagaaagctgga
gactggtatggcccatccattgtagcccacataatcaagagagcagtagaaagagctgaa
gactctgaatcgcttaacattgcagtttacgtggcacaggattgcacagtgtacaaggga
gacgttgtgaatctctgtgagacacagttaaagggtgagaaggttcctggtttggattgg
aagtctgtcattatcctggtacctgttcgacttggaggagaaaacctcaatccagtgtac
atgcagtgtgtgaaggagattctgaagcttgaatgttgcattggaatcatcggtggcaaa
ccaaaacactcactttacttcataggctttcaagatgatttcctgctgtatttggaccct
cactactgccagcctgttgtggatgtaactaaacatgactttgagttggagtcatttcat
tgcatctctccaagaaaactgtccttcagtaagatggatcccagctgtaccatcgggttt
tatgcaaagactaaggaggactttgaaaacttgtgtaaaactgtcacaatggtgttgggc
tcctcatcattgaaagagaagtaccctattttcacttttgcaaggggctgtgctcaggat
tatggtctggatgaactctgcactctcaaaccggataaaactgtgctaatctccaaatct
ggaagaccaggaaagtcaagacagagcagcactgatgaatttgtctttctgtga
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