Rhincodon typus (whale shark): 109919474
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Entry
109919474 CDS
T06055
Name
(RefSeq) DNA repair and recombination protein RAD54-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109919474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109919474
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
109919474
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
109919474
NCBI-ProteinID:
XP_020375079
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Position
10:55825474..55853218
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AA seq
584 aa
AA seq
DB search
MWDCVTGRRISDGFGCIMADEMGLGKTLQCISLMWTLLRQSPDAKPEIDKVIVVTPSSLV
KNWYNEVEKWLGGRLQALSIDGGTKTEIDQKLATFMNQRGLRIPTPILIISYETFRLHAD
VLCKGAVGLVICDEGHRLKNSDNQTYQALNNLNAKRRILISGTPIQNDLLEYFSLVHFVN
AGILGTAQEFKKRFELSILKGRDAAASDSERQHGEEKLKELISIVNRCLIRRTSDILSKY
LPVKIEQIVCCRLTPLQSELYKLFLKQAKPALEVEQAHSGKMSVSSLSSITSLKKLCNHP
TLIYEKCVEGEEGFQGALDLFPLGYSTKSVEPQLSGKMLTLDYILAMTRSTSSDKVVLVS
NYTQTLDLFEKLCRDRKYLYVRLDGTMTVKKRAKIVERFNNPTNPEFIFMLSSKAGGCGL
NLIGANRLVMFDPDWNPANDEQAMARIWRDGQKKMCYIYRLLSTGTIEEKIFQRQTHKKA
LSSCVVDEEQDVERHFSLGELKELFTLNETTASDTHDRLKCRRCVNGHQVRGPPEGSDCT
SDLSQWNHCADKRGLRDMVLQSAWDAAVSFVFHHHSHEQQHGVI
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtgggattgtgtgacaggccgtcgtatttctgatggctttggctgcataatggctgat
gagatggggctggggaagacattacaatgcatttccttgatgtggaccctcttgcgtcaa
agtccagatgctaagccagaaattgacaaagtcattgttgtgactccttccagtttggtg
aaaaactggtataatgaggttgagaagtggctgggaggaaggctacaagcattgtctatt
gatggaggcactaagactgaaattgaccagaaactggccacattcatgaaccagcgtggg
ttgcggattccaactccaattcttatcatttcttatgagacgttccggctacatgctgat
gtgctttgcaagggtgctgtcggcttggtcatttgtgatgagggccacaggttaaagaat
tcagacaaccagacgtaccaggctctgaacaatctaaatgctaaacgccgtatattgatc
tcaggaactccaatccagaatgacctcctggagtacttcagtcttgtacattttgttaat
gcaggaatacttggaactgcacaggaatttaaaaagcgatttgaattgtccatcttgaag
ggccgggatgcagctgcaagtgacagtgaaagacagcatggagaggagaaactaaaagag
ctgatcagcattgtgaataggtgtttaattcgaagaacatcagatattctctccaaatac
ctgccagtgaagattgagcagattgtctgttgcagactcacgcctctgcagtcagagtta
tacaagttgttcctaaaacaagccaaaccagcattagaagtggaacaagctcacagtggg
aagatgagtgtctcctctctgtcttcaattacttcactaaagaagctttgtaaccaccca
acactgatctatgagaaatgtgtggaaggtgaagaaggatttcagggagcactcgatctc
tttccattgggatatagcacaaaatctgtggaacctcagttgtctggcaagatgctcacc
cttgattatattttggccatgactcgaagtactagctctgataaggtggtgctggtatca
aactacactcagactcttgatttgtttgagaagctctgcagagacagaaaatacctgtat
gttagattggatggtaccatgacagtaaaaaagagggccaaaattgtggaacgttttaat
aatcccacaaatcctgaatttatcttcatgctgagtagcaaagctggtggttgtggcttg
aatctgattggtgcaaaccggttagtcatgtttgatcctgactggaatccggctaatgat
gaacaagcaatggctcgtatatggcgagatggacagaagaaaatgtgctacatctacagg
cttttgtcgacggggacaattgaggagaagatcttccagcgtcagactcataaaaaggct
ctgagtagctgtgtagtggatgaggagcaagatgttgaacgacatttctcccttggagaa
cttaaggagctctttactctaaatgagaccacagccagtgatacgcatgataggttgaaa
tgtcgccgttgtgtaaatggacaccaggtgcgcggtcctccagagggctccgattgtact
tcagatctttctcagtggaatcactgtgcagataaacgtggactacgagacatggtcctt
cagtctgcttgggatgctgcagtttcctttgtgtttcatcaccactcacatgagcaacag
catggagttatctaa
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