Rhincodon typus (whale shark): 109919476
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Entry
109919476 CDS
T06055
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03273
Virion - Lassa virus and SFTS virus
rtp04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
109919476
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
109919476
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rtp01009
]
109919476
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtp04515
]
109919476
Protein phosphatases and associated proteins [BR:
rtp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109919476
Cell adhesion molecules [BR:
rtp04515
]
Cadherins
Protocadherins
109919476
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Ig_CLSTN
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
Ig_Cad99C_N
TMEM154
K319L-like_PKD
LAX
Syndecan
Sema4F_C
EphA2_TM
C1orf162
SARAF
MLANA
Motif
Other DBs
NCBI-GeneID:
109919476
NCBI-ProteinID:
XP_048459795
LinkDB
All DBs
Position
12:complement(71025270..71036960)
Genome browser
AA seq
1024 aa
AA seq
DB search
MDLIHTPGVAGLLSLLLLLWPVPPCQAQSVVKFSLPEEQPPNTLIGNPGETLGLDKINRL
FKLEIGTPYLRVDETGGNLYTTETPIDREEMNCERPLECFLEFEVSVTNTLFNSVPILME
GKIHILDINDNTPSFSSPVISISIPEHTTAGTIVNIPTATDRDAGTNGVASYELLGNEAH
GLFSLQVAEEHGEKLPQLIVTGHLDREQRDTYDLTIRVVDGGKPSRASTAILRITVLDIN
DNAPKFERSSYEGTVEENSPVGTSILQVRANDLDLGDNSQIEYTFAQAAESARRLLRLDK
SSGWITVQGPVDREQINQFRFFVHARDKAPIPKQDRAAVTITVRDKNDNAPTIEIRGIGL
VTHKDGVANIDEDVPVDSPVALVQVSDRDEGENAAVTCIVAGDVPFQLKPASEPSSERKK
KFFLQTTTPLDYESVQDYLIEVVAVDSGNPPLSSSNTLKVQVVDVNDNPPIFTQNVIRVS
IHENNQPYIPIVKVEATDADSGSNAELAYSLQPDPSISGLFDIDADTGEIRVNTILDREL
KEHYEFKVAAADKGTPSLKGTATVVVSVLDENDNDPKFMLNSYSFSVRENLPPSSPVGMV
TVSDADKDMNAQISLFVDPDNGEFEIQNGTGTILSRVSFDRERQSTYTFQLKAIDSGNPP
RSAYVSVTINVLDENDNTPVITQPSNSSFQHINPLAQIGTSVEQVKAEDMDIGTNANLTY
SIVGGNPFGLFHISHDGSILLDKEISRRHYGLHRLVVRVKDGGTPSRFATALVHIYVNDT
MGNVSQVEALVGHSLNTPLDVDIAGDPEYEKSKQRSNVLFGVIAGIIAVILVIVIVVLIR
YCRQKEAKSGYQAGKKENKDLYAPKQTNKNAKHKIKKNKPPKPTKPLEDDETGTQRGLQF
NLINESSSDSPRIHLPLNCNPGSPDLGRHYRSNSPLPSIQLHPQSPTAGKKHQVVQDLPA
TNTFVGTGDNNSTGSDQYSDCSYKTNPPKYNKQICDDKHEINQLKICPVIVTLKMRGEVQ
LAAI
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggatctaatccatactccgggggtagcggggctcctctctctcctgctcctactgtgg
cccgtgcccccttgtcaggcacagagcgtggtgaaattttccctcccagaggaacagccg
ccgaataccctgatcgggaacccgggtgagaccctggggctagacaagatcaacagactg
ttcaagctggagattggcactccttacctgcgagtggacgagactggagggaacctgtac
accactgagacccccatagacagggaggagatgaactgtgagagacccctggagtgtttc
ttagagtttgaggtctcagtgaccaacactctgttcaactcagtgccgatactgatggaa
ggcaagattcatattctggatatcaatgacaacacccccagctttagctcaccggttatt
tccatctctatcccagagcacactacagcgggtactattgtcaatatccccactgccact
gaccgtgatgctggcacaaacggagtggccagttatgagcttcttggcaatgaagcccat
ggtttgtttagcttgcaggtagctgaggaacacggtgagaagctgccccagctgatagtg
actgggcacttggacagagagcagagggacacctatgacctgaccatccgagtggtggat
gggggaaaaccctcgcgggccagcacagctatcctccgcattactgtgctggacatcaac
gacaacgcccccaagtttgagcggtcctcctatgaaggcacggtggaagagaacagccca
gttggcacctccatcctccaggtgagagctaatgacctggacttgggtgacaattcccag
attgagtacacgttcgcccaggctgctgagagtgctcgccgcttgctcaggctggacaaa
agcagtggctggatcacggtgcagggaccggtggaccgtgagcagattaaccagttcaga
ttctttgtccatgcccgagacaaggcccccattcccaaacaggacagggctgcagtgacc
atcaccgtcagggacaagaatgataatgcccccaccattgagattcgtggcattgggctg
gtcacccacaaggatggggttgcgaacattgatgaggatgtgcctgttgactcccctgtg
gccctggtccaggtttcagacagggatgaaggtgagaacgcagctgtcacatgcattgta
gctggggacgtaccctttcagctgaaaccagccagtgagcccagcagtgagagaaagaag
aaattcttcctgcagaccaccacgccactggattacgagtctgtccaggattacctgatt
gaagttgtggcagtcgattctggaaacccaccgttatccagcagcaacactctgaaagtg
caggtggtagacgtgaatgacaaccctccaatcttcactcaaaatgtcatccgggtctcc
atccacgaaaacaaccagccgtacattcctatcgtcaaagtggaggccacagatgctgat
agtggcagcaatgctgagctggcctactctctacagccagacccttccatcagcggctta
tttgacatcgacgcagacactggagagattcgggtcaataccattcttgaccgtgagctg
aaggagcattatgagttcaaggtggctgcagcagataagggcacccccagccttaaaggt
acagccacggtagtggtcagtgtactggatgaaaatgataatgacccaaaattcatgctg
aatagctacagtttctcggtgcgagaaaatctccctccatcgagtccagttggcatggtc
actgtgtcggatgcagataaggacatgaatgctcaaatatctctctttgtggatccggat
aatggtgagtttgagatacaaaatggtacgggcaccatcctttcccgtgtctcctttgac
cgagaacgtcaaagtacctacaccttccagctgaaggcaatagatagtgggaaccctcca
aggtcagcttacgtcagtgtcaccatcaacgttttagatgaaaatgacaacactcccgtc
atcacccaaccttccaattcctccttccagcatatcaaccccctcgctcaaatagggaca
tcggtggagcaggtaaaggctgaagacatggacattggaaccaatgccaacttgacatac
agtattgtaggtgggaatccctttggcctgttccatatctctcatgatggaagcatattg
ttggacaaggaaatttcacggagacactacggcttgcacaggcttgtggtcagggtgaag
gatggaggtacaccatctcgttttgctacagcactagtgcacatttatgtaaatgataca
atgggaaacgtcagccaagtggaggctttggtgggccacagtctcaacacaccacttgat
gtggacattgcaggagatcccgagtatgagaagagtaagcagcgaagcaacgtcttgttc
ggagtgatcgctgggattattgccgtcatattggtgattgtgatcgtggtattgatccgt
tactgcaggcagaaggaagccaaaagtggctatcaggctggcaaaaaagaaaacaaggat
ctgtatgctccaaaacagaccaataaaaatgctaagcacaaaatcaagaaaaacaaaccc
ccaaaacccaccaaaccactggaggatgatgagactggaacccaaaggggattacagttc
aacttgatcaatgaatccagcagcgacagtccacggattcatctaccactaaactgtaac
ccagggagccctgaccttggaagacactacaggtcgaactctccactgccatccattcaa
ctgcacccacaatcacccactgctgggaagaagcaccaagttgtgcaagaccttccagct
actaacaccttcgttgggactggggacaacaactcgactggctccgaccagtactctgat
tgcagttacaagaccaatcctccaaagtacaacaagcagatttgtgatgacaaacatgaa
attaaccagctgaagatatgtcctgtgatagtgaccttgaagatgcgtggagaggttcag
ctggcggcgatttga
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integrated database retrieval system
