Rhincodon typus (whale shark): 109919609
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Entry
109919609 CDS
T06055
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rtp03009
]
109919609 (ighmbp2)
03012 Translation factors [BR:
rtp03012
]
109919609 (ighmbp2)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109919609 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
109919609 (ighmbp2)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
Other ribosome biogenesis factors
109919609 (ighmbp2)
Translation factors [BR:
rtp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109919609 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
ResIII
zf-AN1
Viral_helicase1
DEAD
nSTAND3
Helicase_RecD
UvrD-helicase
AAA_22
AAA_16
Flavi_DEAD
IstB_IS21
AAA_25
AAA
NPHP3_N
ABC_tran
ATPase
SLFN-g3_helicase
NTPase_1
Zot
PhoH
UvrD_C_2
RuvB_N
DnaB_C
Motif
Other DBs
NCBI-GeneID:
109919609
NCBI-ProteinID:
XP_048462809
LinkDB
All DBs
Position
17:7194570..7255064
Genome browser
AA seq
1020 aa
AA seq
DB search
MENFVSQNLELLQEERAAEIEETRAWQENISVQELQRRGVCLLKLQVSSQRTGLYGRFLV
SFEPRKREANAALPSNNFSSGDIVGLYDSQGSTPLNQLASGIVTRITQNSITVAFNEPSD
QLNFDSNSSYKLLKLANDVTYKRLTGALKALSQYHAGPTSMLIDVLFGNSEPSSPSEDLK
IPELYNPCLDDSQREAIHFALSQKEFAIIHGPPGTGKTTTIVEIILQAIKQGLKVLCCAP
SNVAVDNLVERLAQFKTQILRLGHPARLLESIHRYSLDAILANSDNTQIVMDIRKDIDQA
FAKLKKTQERGEKMHFRGEIKTLRKELRTREEAAIVQILKKASVVLTTNTGASNDGPLKL
LSNEYFDLVVIDECAQALEASCWIPLMKAPKCILAGDHKQLPPIIISHKAAANGLSLSLM
ERLIQRFGEQVVRMLTVQYRMHNTIMEWASKQMYNGRLTAHKTVAHHLLKDLPGVSSTEE
TKIPLLLIDTAGCGLFELDEEDEQSKGNSGEVQIVTLHIQALIEAGVHPKDVAVIAPYNL
QVQLLRKELSNKYPELEIKSVDGFQGREKEAVILSLVRSNRTGEVGFLAEDQRINVAVTR
ARRHLMVVCDTRTVSSHPFLKSLVDYMTEHGEMRTAFEYCDDIVAENYSRPAHRAEQRRA
KDSSDTHKNNGSSTSDRSAASLKTHKLTQDRSTLKLECKKKITNDSHSLIQKDDANTGTL
EQATKTMNLKDNSEKLKEQIMQFMEDGARTWFEFPSSLNSHDRLLVHQIAEEFGLEHFSI
GESKDRFIVISKSVLLETQSSVDGQPVHKMPEVCHKSSSPVPQISEENECTRTEIERPQN
CTPSISPSKLDLKGLYLERMQREQAKREQKANQKQLSNTTTSLKSKSKQHREKAGKASTR
EAAASSTDEDFDALIAASIKANSVCAFLKCKASILTLGQHCIHCNKHYCLSHHIPEVHGC
GGSAKAHARKLISREGILYAGSGTKDHSLDPAKKAHLQRRLGKKIEQLASQRGAKKETKK
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggagaactttgtatctcaaaatttagagctgttacaagaagaaagagcggctgaaatt
gaagagaccagggcttggcaagaaaacatttctgttcaagaactccagcggcgaggtgtc
tgtctgctgaaactgcaagtatcgagccagagaacgggactgtatggacgctttcttgtt
agctttgaaccgagaaagcgtgaggccaatgcagcgctacccagcaataactttagctct
ggggatattgtaggtctgtatgacagccaaggctctactccattgaaccagcttgcatca
ggcattgtgacgcgcatcacacaaaactcaatcactgtagctttcaatgaacccagtgac
cagttaaacttcgacagtaactcttcctataaacttttgaaactggctaatgatgtaacg
tacaaaagactgacaggtgctttaaaggccttgagccagtatcatgctggacctacttct
atgctcatcgatgtcctgtttggcaattctgagccaagctctccctcagaagatctaaaa
atcccagaactgtacaacccctgcctggatgactctcaaagagaagcaatacattttgca
ctctcgcagaaagaatttgcaattatccatgggcctcctggtactggaaagacaactaca
attgtggaaataattctacaggctataaagcaaggtctgaaggtgctgtgctgtgctccc
tcaaatgttgctgttgacaaccttgttgaacgtctagcgcaatttaaaacacagattttg
cgtttaggccaccctgcaagactgcttgagtccatacatcgttattctttggatgctata
ttagctaacagtgacaacacccaaatagtaatggacatccggaaggacatcgatcaggct
tttgcaaaattgaaaaagacacaagagaggggagagaagatgcattttcgtggtgaaatc
aagactttgaggaaggagctgagaacgagggaggaggcagctatcgtccaaatactaaaa
aaagccagtgttgtgttgacaactaatacaggtgcctctaatgatggtccgttaaaactc
ctgtcaaatgagtattttgatctcgtggtgattgatgaatgtgcacaggcgctggaagca
agttgttggataccattaatgaaagctccaaaatgcatcctggctggagaccacaaacaa
cttcctccaatcatcatttctcacaaagctgcagctaatggcctatcactcagtttgatg
gaacggctaatccagagatttggtgaacaggtggtgagaatgctgactgtacagtatcga
atgcataatacgatcatggaatgggcctccaagcagatgtacaatggacgacttacggct
cacaagacggtggcacatcatttgctaaaggatctgcctggggtttcttctacagaagag
acaaagattccgctgcttctaatagacactgcaggatgtggcttgtttgaacttgatgaa
gaagatgaacaatccaaaggaaatagtggggaggttcaaattgtgactctgcacattcaa
gccctgattgaagctggtgtccaccctaaggatgttgctgtgatagcaccatataatttg
caggtccaactcctgaggaaagaattgtccaacaaatatccggaactggaaatcaagtct
gttgatggttttcaaggaagagaaaaagaggcagttattttatcacttgtgagatccaac
agaacaggtgaggtgggctttctggctgaagatcaaagaataaatgttgctgttactcgt
gcgcgccgccacttgatggtggtctgtgacacgcggacagtcagctctcacccgtttttg
aaatccctggttgactacatgactgaacatggggagatgcgaaccgcgtttgagtactgt
gatgacatcgtggctgaaaattactcccggccagcccatcgggccgagcaaaggagagca
aaagactcttcagatacacacaaaaataatgggagctccaccagtgacaggagtgcagca
tctcttaaaacgcacaaactcacacaagaccgatccactctaaagcttgagtgtaaaaag
aaaattacaaatgacagtcattccctaattcagaaagacgatgctaataccggaacatta
gagcaagccactaaaactatgaatttaaaagataactctgagaaactcaaggaacaaata
atgcaatttatggaggatggtgcaaggacttggtttgaattcccttcatctttgaattct
catgatcggttgttggttcaccagatagcagaagagtttggccttgagcattttagcatt
ggtgaaagcaaagaccggttcattgttatatccaaatcagttcttttggaaacgcagagt
tctgttgatggccaaccagtccacaagatgccagaagtgtgtcacaaatccagtagtcct
gtcccacaaatatctgaggaaaatgaatgtactcgtactgaaatagaaaggccacaaaac
tgtaccccttctatttctccgtcaaagctagatttaaagggactgtacttagaaaggatg
cagcgggaacaagctaaacgagagcagaaggcaaatcagaaacagctttctaacactaca
acttcattgaagtctaaaagtaagcaacatagagaaaaggcggggaaagcctcaactagg
gaagctgctgcaagtagtactgacgaagattttgatgcgctcattgctgcatcaataaag
gcgaacagtgtttgtgcttttttaaagtgtaaagcaagtattctaaccttggggcaacac
tgcattcactgtaacaaacactactgcctcagccatcacatcccagaggttcatggctgt
ggtgggagtgccaaagctcatgcccgaaaactcatcagcagagaaggtattctatatgca
ggcagtggcactaaagaccattcattagatcctgcaaagaaagctcatctgcagagaaga
ctaggaaagaaaatagaacaattagctagccaacgaggtgctaaaaaggaaactaaaaaa
taa
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