Rhincodon typus (whale shark): 109920042
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Entry
109920042 CDS
T06055
Symbol
arhgef28a
Name
(RefSeq) rho guanine nucleotide exchange factor 28 isoform X1
KO
K21072
A-kinase anchor protein 28
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109920042 (arhgef28a)
Membrane trafficking [BR:
rtp04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
109920042 (arhgef28a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
PH_16
C1_1
PH
SOS1_NGEF_PH
Prok-RING_1
PH_13
C1_2
PHDvar_NSD
PHD
Motif
Other DBs
NCBI-GeneID:
109920042
NCBI-ProteinID:
XP_048477074
LinkDB
All DBs
Position
3:96179840..96560612
Genome browser
AA seq
1818 aa
AA seq
DB search
MELSCHEVPIYGQQSVLAVFEMTCPVPEGAEWYFVYEGSSQNHVTVAQRLNAKTLESVVP
GHDTLEDVTVSACIYTEAKSVSILGCSRITYVEDVASKLTQVLVESAGMVDCTSHLTLLE
QFGLTREAAQSLDENMTAAVEHLELPPSWNLLGKWSGKEINHKETLLHVSVRLGLYKFSQ
FLLCQPGGIQAAIVPNEEGLMPVDLALQNGMHCLAEYLKDIENSQVTPSVGISKTYGDSH
ILQKCRSRRNTSILTVDNKIRHSLESDILLLRGYIHDTNLENMGNANMDELKLNHLCTGE
GHNEVKEEQDLCSETFTNEPGQSMGSTEKETCVERASTLGNQAGLLLDGVDQALLDTECK
HSSQEFLKKSKPGLSTFLAAARLSSMLNDREEIYVNCMVVDQVNEGGINYNSNNLTTAST
STTNALHEKSSEDQLCRAYNVPQSMESNIPASLEDNLCRKHSNYYLEDHIDTTILKEDQN
DFTEQVSDLSSPDSILCRSSLLSQQHDCVKAESPSTSIKYKQRFSFDGIDADSEGEEVSD
RSQGSCTPKSPNSVALFASSGDELDSFEIHQETEINIKESESRSSSNSLLPKESEDTGIR
LRSYSLSSPKVSQSKSRFIRDFGVFDSPNEEQRTFSLPEHPKEKRIEEEEWNKYIIPSKA
ETEKYKVSRTFSFLKNRMTSTRNKGKGKHKDAKEKEKWSNGHHFIAGIISGTLQCMVCDK
LVGGKDVLQCFNCTMSIHKSCRDSVPMCIKAKYPNLQDKCQVTSRSKPTHCVHSNSLKDA
SQSAFLSMNSTSSSLPIGLFAVKRETLLQHQPLSKSASSISIERRIMESMDMEVDSYVSR
NKSQSEELLQTMGTSPSTESLALEDNVVPSMRGDLEFDAQEFKAESWSLAVDHAFSSKQQ
KDLIQRQDVIYELMQTEMHHIRTLEIMSEIFRKGMKEELQLDHNTIDKIFPSLDELLEIH
KHFFFCLKERRRESFEEDSERNFFINRIGDILLQQFADENGNKLKQTYGDFCSHHKEAVS
FFKELQQQNKKFQNFIRQQSNNLLVRRLGVPECILLVTQRITKYPVLLERILQYTKEGTE
ENEDVAKSLSLIKDIIAAVDTKVNKYEKEQKLLDILNKFENKTCGKLKNGRIFRKQDLII
KGRELQHEGSMYWKTATGRLKDITALLLTDVLVFLQEKDQKYTFANVDQKPAVILLQKLI
VREVANEERGMFLISASSAGPEMYEMHTNSKEDRNNWMRLIRMAVESCPEEEEERLSEYE
EDKRIAEARAARTQKFQERLRFQDQLVCSSLEEKLQIYAEMAERNGYEEAGQETQLLIKP
DTVEFPQAGFLLTAAVREAESLHRLLTSQPCNFAEQSRESLEEAVMPQKLEMFGSFSLGA
SQPSMYAPDAKIPDPQLSLVDSVMKQTGSAWYGFDTPFLQTDGELYKPRSHDTVRKIVHS
VQNITQLLYSLQAVVTMQDSYIEVQRLILQERERSAHIQGTRGNLLLEQEKQRNMEKQRE
ELANVRKLQSKLYHEQQRWERECERRQREQEAQESRLQEREQECQQQAEQMWREREELES
QWKEYQQNLERLREGMRMVEKERDKLEAQQRHLNAWKHSRQRSLPVMMFPQETSQVPIHT
RTGSLGGGGIDTASVFVNEAALQYSPNNYQRANSAQTVSEPHKMESTLNSSVRINENLKH
EVPVQLLSATNQLLKPTGIQQQIPTKLASFSKGNREKIKASCDQANYIKEMIYTKDNLDK
ASSSSSHVLLEHQSVIFNSDLNTKQTTLSVQKPASSTLHQGGLQSQHEMQLLVQECSYVP
QESKHGQKDGAEENVFYF
NT seq
5457 nt
NT seq
+upstream
nt +downstream
nt
atggagttgagctgccatgaagtgccaatatatggtcaacagtctgtgctagcagtgttt
gaaatgacctgtcctgtacctgagggtgccgaatggtactttgtatatgaaggttcaagc
cagaatcatgtaactgtggcacagagacttaatgcgaaaacactggagtcagttgttcca
ggtcatgatactttagaagatgttacagtttctgcctgtatatacacagaggcaaaatca
gtatctatccttgggtgcagcaggataacatacgttgaggatgtagcatctaaactaact
caagttctggttgaaagtgccgggatggtggattgcactagccacctgactctgcttgaa
caatttggcctaaccagagaggctgcacagtctttagatgaaaatatgacagctgccgtt
gagcacttggaattaccaccatcttggaatctgcttggaaagtggtcaggaaaagagata
aaccacaaggaaaccctgctacatgtttcagtgagactaggtctttacaaattctctcag
tttttactgtgccagcctggtggtatccaagctgcgattgtgcccaatgaggaaggactg
atgcccgtggacttagctttgcagaatgggatgcattgccttgctgaatatttgaaagat
attgagaattcccaagtcacaccatcagttggaatctcaaagacttatggtgacagccac
atactacagaagtgccgaagtagacgaaacacatctatactgactgtggataacaagata
aggcattcactggagtcagatattctgttgctgcggggatatatacatgatactaacttg
gagaatatgggaaatgcaaacatggatgaactgaagttgaatcacctctgtacaggggaa
ggccataacgaagtaaaagaagaacaagatctttgttctgaaacgtttaccaatgaacca
ggtcagtcgatgggaagcacagagaaagagacctgtgttgagcgtgctagcactctggga
aatcaagcaggtttattgctggatggagtggatcaggccctacttgatacagagtgcaaa
cattcttcacaagaattcctcaagaagtcaaaaccaggtttgtctacctttctggctgca
gcaagactttcttccatgctgaacgacagagaagaaatttatgtcaattgtatggttgta
gatcaggttaatgaaggcggtataaactataatagtaacaatcttaccactgcaagtacc
agtactactaatgcactgcatgagaagtcatctgaggaccaactttgccgggcttacaat
gtcccccagtcgatggaatccaatatacctgcatcattagaagacaatctatgtaggaag
cattcaaattactatcttgaggaccacatagacaccacaattctgaaggaagatcagaat
gattttacagaacaagtttctgatttgtcttcacctgatagtattttatgccgatcgtca
ttattatctcagcagcatgattgtgtcaaggcagaaagtccttccacaagcatcaaatat
aagcaaaggttcagctttgatggcattgatgcagacagcgaaggagaagaggtttcagac
aggtctcagggctcatgcactccaaaatctccaaattctgttgcattatttgccagcagt
ggagatgaactggattcttttgagattcaccaggaaactgagataaacatcaaggaatct
gaatcaaggtcttcatccaacagcttgttgccaaaggagtctgaagatactggaattcgg
ctgagatcatactccctttcctctcctaaagtgtctcaaagcaaatctcgattcataaga
gattttggtgtgtttgattccccaaatgaagaacagcgaaccttcagtctgcctgagcat
ccgaaagaaaaaagaattgaagaggaagagtggaacaagtatattattccttcaaaagca
gagactgaaaaatataaagtgagtcgtacgttcagcttcctcaaaaacagaatgacgagc
accaggaataagggcaaggggaagcataaagatgccaaggaaaaggagaaatggagcaat
ggccaccacttcattgcaggaattatttcagggacactacagtgcatggtttgtgacaag
cttgttggtggaaaggatgttctacagtgcttcaattgtaccatgagtattcataaaagt
tgcagagattctgttcctatgtgtatcaaggccaagtatccaaatcttcaagataaatgt
caagtaacatcccgaagcaaaccaacccactgcgtgcactcaaattcactcaaggatgca
tcacagtctgcattcctatcaatgaactccacgtcatcttctttgcctattgggcttttt
gctgtcaaacgagaaactttgctgcaacatcagccactgtcaaaaagtgcttctagtatt
agtatagagagaagaatcatggagtcaatggacatggaggtagatagctatgtttctcgg
aacaaatcacaatcagaggaattgcttcaaacaatgggcacatctccttcaacagaatcg
cttgcattagaggataatgtagtcccttcaatgcgtggagaccttgagtttgatgcacag
gagtttaaagctgagtcctggagtcttgctgttgatcatgcatttagtagtaaacaacag
aaagatctgatacagagacaagatgttatttatgagctgatgcagacagagatgcaccac
attcggaccctggagataatgtcagaaatttttaggaagggcatgaaggaggagttgcaa
ttagatcacaacaccattgacaaaatatttccatctttagacgaactcttagaaattcac
aagcacttttttttctgcttaaaagagagaaggcgggagtcttttgaggaagacagtgaa
aggaactttttcatcaataggattggtgatatccttttacaacagtttgcagatgaaaat
ggcaataaattgaagcaaacctatggtgatttctgtagccaccacaaagaagcagtcagt
ttctttaaagaactgcagcaacaaaataagaaattccaaaactttatcaggcaacaaagc
aacaatctgctggtccgacgccttggtgtaccagagtgcatactactcgttacccagcgg
atcaccaaatatccagtcctgcttgagcgaatactgcaatacacaaaagaaggaacagaa
gagaatgaggatgtggcaaaatctctgagtttgataaaggacataatagcagcagttgat
acaaaggtcaacaaatatgaaaaagagcaaaagctattggacatcttaaataagtttgaa
aacaaaacatgtggcaagttaaagaatggccgcatattccggaaacaggacctgatcatc
aaagggagggagttacagcatgagggctccatgtattggaaaacagccacaggacgattg
aaagatattacagctctgcttcttactgatgtgctagttttcctgcaggagaaagaccaa
aagtatacttttgcaaatgtggaccagaagcctgcagttattttgctgcagaaattaatt
gtccgagaagtagccaatgaagaacgaggaatgttcttaattagtgcttcatctgctgga
cctgaaatgtatgaaatgcatacaaactcaaaagaggataggaataactggatgagactg
attcgaatggcagtagagagctgtcctgaggaggaggaagaacgtttaagtgaatatgaa
gaggacaagcgtattgctgaggcaagggcagccaggacccagaaattccaagagcgactg
agattccaggatcagctagtttgcagtagtttagaggagaagctgcaaatctatgcagaa
atggctgaaagaaatggctatgaagaagcaggtcaggaaacgcagcttttgatcaaacca
gataccgttgaatttccacaagctggatttttattgactgctgcagtcagagaggctgaa
agtctgcatagactactaacatctcaaccatgcaattttgctgaacagtcgcgggaaagt
ttggaagaagcagtgatgccacaaaaactagaaatgtttgggagctttagtttgggagct
tcacaaccatctatgtatgcacctgatgctaagatcccagatcctcagttatcacttgtg
gattcggtgatgaaacagacaggaagtgcatggtatggctttgacactccatttttgcag
acagatggtgaactctacaaacctagatcacatgacactgtacgaaagattgttcacagt
gtacaaaatatcactcagcttctttacagtttacaggctgtagtgaccatgcaggacagt
tacatagaagtgcagcggctgatcttgcaggagcgtgagcgatcagctcatatccaaggc
acccgtgggaacttgcttctcgagcaagagaagcagcgcaacatggagaagcaaagagaa
gaactggcaaatgtacgcaaacttcagagcaagctgtaccatgagcagcagcgttgggaa
cgagaatgtgaacgcaggcagcgggagcaggaagcacaagagagtagactacaggaacgt
gagcaagaatgtcagcagcaggcagagcagatgtggcgagagcgggaagagttagagagc
cagtggaaagagtaccagcaaaatctggagagactgagggaaggcatgagaatggtggaa
aaggaaagagacaaattggaggcgcagcaaaggcatctaaatgcctggaaacacagccga
cagaggagcctgcctgtgatgatgttcccacaggaaaccagtcaggttccaattcacact
cgcacaggaagcttgggcggtgggggaatagatacagcatcggtctttgtaaatgaggca
gcactccaatattcaccaaacaattaccaaagagcaaacagtgcacagacagtttctgaa
cctcataaaatggagagcaccttgaactctagtgtaaggattaatgaaaacttgaaacat
gaagttcctgttcagcttctcagtgcaaccaatcagcttctgaaacctacaggcatccaa
caacagataccaacaaaattggcaagtttctccaaaggaaacagggaaaaaatcaaagct
tcctgtgaccaagctaactatataaaagagatgatttacacaaaagataatcttgataaa
gcaagtagttcttcaagtcatgtgttactagaacatcaaagtgttattttcaattcagat
ctgaataccaaacaaacaaccttgtctgttcagaaaccagcttcgagcactctgcaccag
gggggtttacagtcacagcatgaaatgcagctgttagttcaagaatgctcatatgtccca
caggaaagcaaacatggacaaaaagatggggctgaagagaacgtattttacttctga
DBGET
integrated database retrieval system
