Rhincodon typus (whale shark): 109920162
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Entry
109920162 CDS
T06055
Symbol
ctr9
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109920162 (ctr9)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
109920162 (ctr9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_8
TPR_14
TPR_16
TPR_CcmH_CycH
TPR_12
TPR_17
TPR_10
TPR_6
TPR_11
TPR_7
ANAPC3
TPR_Slam
TPR_9
ARM_TT21_4th
PknG_TPR
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
109920162
NCBI-ProteinID:
XP_048463303
LinkDB
All DBs
Position
17:34853410..34918958
Genome browser
AA seq
1225 aa
AA seq
DB search
MPELEEHTLLEGSRAEEDERNLKARTRVLKFTCFTRSGFRTPRPAPEADSGARQAAMLSR
GSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWMALALEYFKQGKTEDFVKL
LEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKELITQATLLYTMADKI
IMYDQNHLLGRACFCLLEGDKMDQAEAQFNFVLNQSPNNIPALLGKACISFNKKDYRGAL
AYYKKALRTNPGCPAEVRLGMGHCFVKLSKLEKARLAFGRALDLNPKCVGALVGLAVLEL
NNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVEA
MQAESCYQLARSFHVQGDYDQAFQYYYQATQFASTTFVLPFFGLGQMYIYRGDKENAAQC
FEKVLKAYPNNYETMKILGSLYATSDEQEKREVAKGHLKKVTEQYPDDVEAWIELAQILE
QSDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLERAKA
EAEHDEHYYNAISVTTSYNLARLYEALCEYHEAEILYKNVLREHPNYVDCYLRLGCMARD
KGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYS
MLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDPKNLYAANGIGAVLAHKGYV
REARDVFAQVREATAEISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKHQSTEVLLFL
ARAYFKCGKLQDCKQTLLKARHAAPNDTVLMFNMALVLQRLATSVLRDEKSNLKAVLNAV
KELELAHRYFKYLSNAGDKMRFDLAQAAAEARQCSDLMSQAQYHVARARKQDEEDRELRC
KQEQHKEMLRMQMVKEQEDKKQKELNEQRKLLEQRSQFLEKTRNLLVFNEETETSKEKKK
GGGKRGKKGEFEDFVNDDSDDDLPLPKKKRKQRASGSEPENGDEEGQQKKRKKRRRPQRP
AEEGSDDEEAGSHAKKPRRPKAGERKKKEKVKPERLPPSMKGKIKSKAIISSSDDSSDEG
ALKIAEGNARESGSDEDESADKHRKRIVSESESEDGQNQGKSESEVGSSPRSRAAHSVAD
SDSEHSASGRPQSDHSGRSRSASSSSGGEEDESQPASRASKNSDQQSSDGGGSGQGSAVE
SDQESNPGNTHQGSVSPTQSDDDSD
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattggaggagcacacccttcttgaaggttctagagctgaagaagatgagagg
aacttgaaagcaaggacgagagttttaaaattcacttgttttaccagaagcggtttccgg
accccgcgccctgccccggaagcagactctggagccaggcaggccgcgatgctgtcgcgc
ggatccatcgagatcccgctccgggacacggatgaggtcattgaacttgatttcgaccag
ctaccagaaggagatgaagtcatcagtattctcaagcaagaacacacccagctccacata
tggatggccttggcgctggagtacttcaaacaaggaaagacagaagatttcgtgaagtta
ctggaagctgctcgtattgatggaaacctggattatcgagatcatgagaaagaccagatg
acctgtctggacactcttgctgcttactatgtgcaacaggctcggaaagagaagaacaaa
gatgcaaagaaagagcttatcacacaggctaccttgctgtacaccatggctgacaaaatc
atcatgtatgaccagaatcacttgttgggaagagcctgtttctgtctgttggagggggat
aaaatggaccaagctgaagcacagttcaactttgtactaaatcagtcaccaaataacatc
cctgcactcttgggtaaagcttgtatctcttttaacaaaaaagattacagaggtgctttg
gcctattataagaaagcccttcggaccaatcctggatgcccagctgaggtacggctggga
atgggccattgctttgtgaagctaagtaaactagagaaagctcgcctcgcgtttggaagg
gctctggatctcaaccctaaatgtgtcggggcactggtggggctggctgtcctggaacta
aacaacaaagaagctgattccatcaaaaatggcgtgcaactactctcaagagcttacaca
atcgaccctagcaaccctatggtattaaatcacctggccaaccacttcttcttcaaaaag
gattacagcaaagtacagcacctagctcttcatgctttccataataccgaggtggaggct
atgcaagcggaaagctgttatcagttggccaggtcctttcatgtacagggtgattatgac
caggcttttcagtactactaccaagccacccagtttgcttccaccacctttgtcctgcct
ttctttggccttggacagatgtacatttatcgaggggacaaggagaatgcagcacagtgc
tttgaaaaagttctcaaggcctatcccaacaattatgaaacaatgaagattctaggttcg
ctgtatgccacctcagacgagcaggagaagagagaggttgcaaagggacatctaaagaaa
gtgactgaacagtacccggatgatgtagaggcctggattgaactagctcagatccttgaa
caatcagatattcagggtgccctatcagcctatgggacagctacacgaatccttcaggag
aaggtgcaagctgatgttcctcctgaaatcctaaacaatgttggggcacttcatttccga
ctgggaaacttaggagaagccaagaaatacttcctggcatcacttgaacgtgccaaagct
gaagcagagcatgacgagcattactacaatgcaatctcagttactacttcctataacctg
gccaggctgtacgaggccctgtgtgaataccatgaagctgaaatattatacaagaatgtt
ctaagagagcatccaaattatgtggattgttacctacgcttgggctgcatggcaagagac
aaggggaatttttatgaagcctctgactggtttaaggaagctctacagatcaaccaggat
catccagatgcttggtcactgattgggaatcttcacttggctaagcaggaatggggacca
ggacaaaaaaagtttgaacgaatcttgaaacagccatcaactcagaatgacacctattcc
atgttggccttgggtaatgtttggcttcagactttgcaccagccaactagggacagagaa
aaggagaaacgacaccaggaccgggcactggcaatctacaagcaagtgcttcggaatgat
cccaagaatttgtatgctgctaacggcataggtgctgtattggcacacaaagggtatgtc
cgtgaggctcgtgatgtatttgcccaggtgagggaggctacagcagaaataagtgatgtc
tggctaaacctagcgcacatctatgtggagcagaaacagtatataagcgctgtccagatg
tacgagaactgcttgaagaagttttacaaacaccagagcacagaagtactgctgttctta
gcaagagcttacttcaaatgtggaaagcttcaggattgcaagcaaactttgctgaaggcc
aggcatgcagcccctaatgacaccgtgcttatgtttaacatggccttggtgctacagaga
ttagccacgtctgtcctccgggatgaaaagagcaacctgaaggcagtattgaacgcagtc
aaagaactggaactcgcccatcggtatttcaaatatctcagtaatgccggggataaaatg
agatttgatttggctcaagctgctgcagaggcaaggcagtgctctgatctgatgagccaa
gcccagtatcatgtggctcgtgcacgcaaacaggacgaagaggatcgtgagctgcgctgc
aagcaggagcagcataaggagatgctgagaatgcaaatggtcaaggaacaggaggataag
aaacaaaaggagctaaatgagcagcgtaagttactggaacagcgaagtcagtttttggaa
aaaactaggaacttgttggtattcaatgaagagacagagacctcaaaggagaagaaaaaa
ggaggtggaaagcgtgggaagaagggagaatttgaagactttgttaatgatgattctgat
gatgacttaccattgcccaaaaagaagaggaagcaaagagcaagtggcagtgaacctgag
aatggagatgaggaaggccaacaaaagaaaaggaagaagaggagacgaccacagagacct
gctgaggagggcagtgacgatgaagaagctggctcacatgccaagaaaccacgcagacca
aaagcaggagagcggaagaagaaagaaaaggtcaaacctgaacgactcccaccttccatg
aagggtaaaatcaagtcaaaagcaataatttcatccagtgatgattcctctgatgaagga
gcactgaagatagctgaaggaaatgcacgggagagtgggtcagatgaggatgaatcagct
gacaagcacaggaagcgaattgtgtctgagagcgagtcagaggatgggcagaatcaggga
aagtcagagagtgaggtgggcagcagcccaagatcacgggctgcgcattcagttgccgac
tccgacagtgagcattcagccagtggacggccacagtcagatcactcgggaaggagtaga
tctgccagctcgtcatcaggaggggaggaggacgagtctcagcctgcttcacgagcctca
aagaattcagaccagcagtcttctgatggaggaggttcaggccaaggctcagctgttgaa
tcagatcaagaatccaatcccgggaacactcatcaaggatccgtgtctcccacacaatca
gatgatgacagtgactga
DBGET
integrated database retrieval system
