Rhincodon typus (whale shark): 109920229
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Entry
109920229 CDS
T06055
Symbol
cltcl1
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04142
Lysosome
rtp04144
Endocytosis
rtp05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
109920229 (cltcl1)
04142 Lysosome
109920229 (cltcl1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
109920229 (cltcl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109920229 (cltcl1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtp04147
]
109920229 (cltcl1)
Membrane trafficking [BR:
rtp04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
109920229 (cltcl1)
Exosome [BR:
rtp04147
]
Exosomal proteins
Proteins found in most exosomes
109920229 (cltcl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Gp18_dom_I
Motif
Other DBs
NCBI-GeneID:
109920229
NCBI-ProteinID:
XP_048467139
LinkDB
All DBs
Position
24:complement(40268889..40324215)
Genome browser
AA seq
1689 aa
AA seq
DB search
MAQILPIRFQEHLQLQNQGVNPANIGFSTLTMESDKFICIREKVGEQAQVVVIDLNDPAN
PIRRPISADSVIMNPASKVIALKAGKTLQIFNIEMKSKVKAHNMVEEVTFWKWISLNTVA
LVTETAVFHWSMEGDSQPQKMFDRHASLAGCQIINYRTDLQQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFADFKLEENPAPSTLFCFAVRSQAGGKLHIIEVGQPAAGN
QPFTKRAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHLYDLESGACIYMNRISA
ETIFVTAPHEPTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLALRLAVRSNLAGA
EELFARKFNTLFAQGNYAEAAKVAASAPKGILRTPDTIRKFQTVPAQPGQASPLLQYFGI
LLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKTADPTLALSVYL
RANVPTKVIQCFAETGQFQKIVLYAKKVGYTPDWVFLLRNVMRVSPDQGLQFAQMLVQDE
EPLANINQIVDVFMENNLIQQCTSFLLDALKNNRPSEGHLQTRLLEMNLIHAPQVADAIL
GNQMFTHYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNYFGALSV
EDSLECLRAMLSANIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLGSIVN
FSQEPDVHFKYIQAACKTGQIKEVERICRESNCYDSERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEEVIKNLITVVRGQF
STDELVGEVEKRNRLKLLLPWLEARVHEGCEEPATHNALAKIYIDSNNNPERFLRENPFY
DSSVVGKYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPQLWANVL
EENNPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNNVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIDHIGNLDRAYEFAERCNEPAVWSQLARAQLQKDLVKEAIDSYIKADDPSAYMEV
VKAANKNNNWEDLVKFLQMARKKAKESYVETELIFALAKTNRLSELEEFVNGPNNAHIQQ
VGDRCYDDGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFAC
VDGQEFRLAQICGLHIVIHADELEELISYYQDRGYFEELISLLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAVITMMS
HPTDAWKEGQYKDIIAKVANVELYYKSLQFYLDYKPLLINDLLMVLSPRLDHTRAVNFFS
KVGQLPLIKPYLRSVQNHNNKSVNEALNNLLTEEEDYQGLRTSIDAYDNFDNIVLAQRLE
KHELIEFRRIAAYLYKGNNRWKQSVELCKKDRLYKDAMQYTAESKDTELSEKLLQWFLEE
GKQECFASCLFTCYDLLRPDVVLELSWRHNIMDFAMPYFIQVMREYLGKVDELMEKPTAQ
QSIKAKAISVDKLESSDSLRKDEDQVAEPAPLVFGQQLMLTAGSTAVPQPGYAYGYPAGY
AQPAYGFNM
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatacttcccatccgcttccaggagcacttgcagctccaaaaccaaggggtg
aatcctgccaacattggattcagtacccttaccatggaatcagacaagttcatctgcatc
agggagaaggtgggagaacaggcgcaagttgtagtgattgatctaaatgatccagcaaat
ccaattcggcgtcccatatctgctgatagtgtcatcatgaatccagcaagcaaagtgatt
gcgctgaaagctggcaaaaccctacagatatttaacattgaaatgaagagcaaagtgaaa
gctcataacatggttgaagaagtcacattctggaaatggatttctttaaacactgttgcc
ctagtaactgagactgcagtattccattggagcatggaaggtgactctcagccacagaag
atgtttgatagacatgcaagcttggcaggctgtcagatcattaactacaggacagacctc
caacagaagtggctgcttctaattggaatttctgcacagcaaaacagggtagttggtgca
atgcaactgtactctgtggataggaaggtatcccagccgatcgagggacatgctgcagct
tttgctgacttcaaactggaagagaatcctgcaccgtcaactctcttttgctttgcagtt
cgcagtcaagcaggagggaagttacatataatagaagtaggtcagccagctgctggaaac
cagcctttcacaaagagagcagtggatgtgtttttccctcctgaggcccaaactgacttt
ccagtagcaatgcaaattggaacaaaacatggggttatatatcttattaccaaatacggc
tacatccacttgtatgacttggagtctggtgcttgtatctacatgaaccgtattagtgct
gagaccatttttgtgactgctccccatgaacctacatctggcatcattggagtcaataaa
aaaggacaagtattatcggtctgtgtggaagaagaaaatattgttaactatgctactaat
gtgctccaaaacccagacctggctctccgtttggctgtaagaagcaaccttgctggtgct
gaggaactttttgcacgcaagttcaacactttatttgcacaaggaaattatgctgaagct
gctaaagtagctgcatcagcaccaaagggtattctgcggactccagacacaattagaaaa
ttccagactgtcccagcccagccagggcaagcttcaccacttctgcagtattttgggata
ctcctcgatcagggtcagctgaacaagtatgaatcactggaactctgccgtcctgttttg
caacaaggccgcaagcaattgctggagaaatggctaaaggaagacaagttggagtgttct
gaggagttgggagacttggtgaagacagctgatcccacactagctttaagtgtctatctc
cgagccaatgtgccaactaaagttatacaatgttttgcagaaactgggcaattccagaaa
attgttctgtatgccaaaaaggttggttacactccagactgggtcttcctgctgagaaat
gttatgcgcgtgagccctgaccaaggacttcagtttgcacagatgcttgtccaggatgaa
gaacccctagctaacatcaatcagattgtggatgtatttatggaaaataacctgatccag
cagtgtacgtctttcctattggatgctttgaagaataacaggccttctgagggtcactta
caaactcgactccttgaaatgaatctgatccatgcaccacaggttgctgatgcaatcctt
ggaaaccagatgttcactcactatgatcgagcccatattgcccagctgtgtgaaaaggct
ggtttgttgcagagggctttggagcactatacagatctatatgatattaaacgtgctgtt
gtacacactcaccttttgaaccctgagtggcttgtgaactactttggtgcactgtccgta
gaagattccctcgagtgcttgcgcgccatgctgtcagctaacatccgtcagaatctgcag
ctttgtgtgcaagtagcatccaagtaccatgaacaacttggcacacagtcattggtggaa
ctttttgaatcctttaagagttatgagggattattttatttccttggatccattgtgaac
ttcagtcaggagccagatgttcacttcaagtatattcaggcagcatgtaaaactgggcaa
attaaagaagttgagcgtatatgcagggagagcaactgctacgattcagaacgtgtgaag
aatttcctgaaggaagccaaactgacagaccagctaccactaatcattgtatgtgatcgg
tttgactttgttcatgacctagttctgtacctgtaccgcaacaacctgcagaagtacatt
gaaatctatgtccagaaggtgaatcccagcaggcttccagtagtggtaggtggactactg
gatgtggactgctctgaagaagttatcaaaaatcttatcactgtagtccgtggacagttt
tcaactgatgagcttgtgggtgaagtagagaaaaggaacagattaaagttgctgcttcca
tggctggaggctagagttcatgaaggatgtgaagaacctgctactcacaatgctctagct
aaaatctatattgacagcaataacaatcctgagcgtttcctgcgtgaaaatcctttctac
gacagctcagtggttggcaagtactgtgaaaagagggatccacacttagcttgtgtcgct
tatgagcggggccagtgtgatctggatctgatcaaggtttgcaatgagaactctctattc
aagagtgaggctcgctatcttgtacgtagaaaagatccacagctctgggccaatgttctt
gaagaaaataatccctttagacgacagctgattgaccaggttgtccaaacagccctgtct
gaaacccaggatccagaagaagtttctgtcactgtgaaagcctttatgactgctgacctt
cccaatgaactgattgaactgcttgagaagattgtcttggataacaatgtctttagtgaa
cataggaatctacagaacctactgatactaactgctattaaagcagatcgcacccgtgta
atggagtacattaatcgtctagacaactatgatgctcctgatattgccaacattgccatc
agtaatgagcttttcgaagaagcctttgcaatcttccggaagtttgatgtgaacacttct
gctgtgcaggttctcattgaccacattggcaatcttgatcgtgcttatgaatttgccgaa
cgctgcaatgagccagctgtgtggagtcagctggcaagagcacagttacagaaggatttg
gttaaagaagccattgattcctacatcaaggcagatgatccttctgcttacatggaggtt
gtgaaagcagccaacaagaacaataactgggaagacctggtgaagtttctgcaaatggct
cggaagaaagccaaggagtcgtatgtggagacggagttgatatttgctctggcaaagacc
aaccgcttgtctgaattggaagaatttgttaatggacccaacaatgcccacattcagcaa
gttggtgatcgctgctatgatgatggcatgtatgatgcagcaaagttactttacaacaat
gtgtccaactttgctcgcttagcttctacgctggtacatctaggagagtaccaagctgct
gtggacagtgctcgcaaagctaacagcaccagaacttggaaagaggtttgttttgcctgt
gtggatggccaagagttccgtctggcccagatatgtggactacacatcgtcatccatgca
gatgaacttgaggagctaatcagttactaccaggatcgaggatattttgaggaactgata
tctctcttggaagcagcattgggtttggaacgggctcatatgggaatgttcacagagctg
gcaatactgtactccaaattcaagccacaaaagatgcgagaacacttggaacttttctgg
tccagagttaatattccaaaggtccttcgtgcagcagagcaggcgcacctctgggctgag
ctggtcttcctttatgataaatatgaagagtatgacaatgcagtcattactatgatgagt
cacccaacagatgcttggaaggaaggacagtacaaagatataattgcaaaggttgctaat
gtagagttgtattacaagtctctgcagttctacctggattacaaaccactgttgatcaat
gatctgttaatggtgctgtcaccacgtttagaccataccagggcagtcaactttttcagt
aaggtaggccagttgccactaataaaaccatatttgcgctctgttcaaaatcacaataac
aaatctgtgaatgaagctctgaacaacctgcttactgaagaagaggattatcagggtttg
cgtacatctattgatgcatatgacaactttgacaacattgtccttgctcagcgcttagaa
aaacatgaactaattgagttcaggcgcattgctgcttatctttacaaaggtaacaatcgc
tggaaacaaagtgtggaactctgcaaaaaagaccgtttgtacaaggatgcaatgcaatat
acagcagagtccaaggacacagagctctctgagaaactcctgcaatggttcctagaggag
ggcaagcaagaatgttttgcatcctgcttattcacatgctatgacttgctacggccagat
gtggtacttgagctgtcatggaggcataatatcatggactttgccatgccatattttatt
caagttatgagggaatatcttggcaaagttgatgaattaatggaaaagccaactgctcaa
caatcgattaaagccaaagcaatatcggtcgataaacttgaatcttcagatagcttgaga
aaagatgaagaccaagtggctgagccagctcccctagtatttggtcagcagttaatgttg
acagcaggctccactgcagtccctcagcctggctatgcttacggttatccagctggttac
gctcaacctgcttatggcttcaacatgtag
DBGET
integrated database retrieval system
