Rhincodon typus (whale shark): 109920336
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Entry
109920336 CDS
T06055
Name
(RefSeq) actin-related protein 2/3 complex subunit 1B-like
KO
K05757
actin related protein 2/3 complex, subunit 1A/1B
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04144
Endocytosis
rtp04517
IgSF CAM signaling
rtp04530
Tight junction
rtp04810
Regulation of actin cytoskeleton
rtp05100
Bacterial invasion of epithelial cells
rtp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
109920336
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
109920336
09144 Cellular community - eukaryotes
04530 Tight junction
109920336
09142 Cell motility
04810 Regulation of actin cytoskeleton
109920336
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109920336
05100 Bacterial invasion of epithelial cells
109920336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109920336
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
rtp04812
]
109920336
Membrane trafficking [BR:
rtp04131
]
Others
Actin-binding proteins
Arp2/3 complex
109920336
Cytoskeleton proteins [BR:
rtp04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Arp2/3 complex
109920336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR3_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
PEP5_VPS11_N
WD40_Gbeta
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_TEP1_2nd
eIF2A
Rax2
WD40_MABP1-WDR62_1st
EIF3I
RMC1_N
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
RAG2_PHD
Beta-prop_SPT8
DUF4423
Motif
Other DBs
NCBI-GeneID:
109920336
NCBI-ProteinID:
XP_020375965
LinkDB
All DBs
Position
21:complement(40095300..40134036)
Genome browser
AA seq
369 aa
AA seq
DB search
MSYHSFLLEPISCHAWNKDRTQIAICPNNHEVHIYKKEGSKWNRIHELKEHSGHVTGIGW
APESNRIVTCGTDRNAYVWTLKGNVWKPTLVILRINRAARCVKWSPKENKFAVGSGSRVI
SVCYFEQDNDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSSDFKCRVFSAYIKEVEEKP
SPTPWGSKMPFGELLFESSGTGGWVHGVCFSDSGNRLVWVSHDSTVCVTDANKKSTIATL
DTASLPLLTVTFITESSLVAAGHDCYPVLFTYDSTKDTVTIGKKLDVPKQNVQRGMTALA
KFRNLDKTASADNTTTTLETLHKNSISQISIVEGGKKNCSKFCTTGMDGGMAIWDIKTLE
ADLKDLKIV
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgtcttaccacagcttcctgcttgagccaatcagctgtcatgcctggaataaagacagg
acccaaattgctatttgtcccaacaaccacgaggttcacatttacaagaaagaagggtcc
aagtggaacaggattcacgagttgaaggagcacagtggacatgtgacagggattggctgg
gctccagagagcaatcgaatcgtgacctgtggcactgaccgtaatgcctatgtctggacc
ctgaagggaaatgtttggaagcctactcttgtcattttaagaatcaaccgtgctgcacga
tgtgtgaagtggtcaccaaaggagaacaagtttgcagtgggcagcgggtcacgagtgatt
tctgtctgctattttgagcaggacaatgattggtgggtttgcaaacatatcaagaaaccc
attcgttccactgtactgagtctggattggcatcccaataacgttctattggctgctgga
tcctctgacttcaaatgcagggttttctctgcctacattaaggaggttgaggagaaacca
tcacccacgccgtggggttcaaagatgccatttggagaacttttgttcgagtccagtgga
actggaggttgggttcacggagtctgtttctctgatagcgggaaccgcttggtctgggtc
agccatgatagcactgtgtgtgtcacggacgccaacaagaagtcaacgattgctaccctt
gacactgcatctctacctctcctgactgttacatttatcaccgagagcagtttagtggca
gcgggtcatgactgctacccagtgctgttcacttatgacagcaccaaagacacagtgaca
atcggcaagaagctagatgttcccaagcagaatgtgcaacgtggaatgacagctttagca
aaattcaggaacctggacaaaactgcatcagctgataacaccaccaccaccctggagacc
ctacacaagaacagcatcagccaaatttcaatcgttgagggtggaaagaagaactgttct
aagttttgcaccactggtatggatggtggaatggcaatctgggatattaagacgctggaa
gctgacttgaaagatttgaagattgtctga
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