Rhincodon typus (whale shark): 109920441
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Entry
109920441 CDS
T06055
Name
(RefSeq) histone-binding protein RBBP4 isoform X4
KO
K10752
histone-binding protein RBBP4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03082
ATP-dependent chromatin remodeling
rtp03083
Polycomb repressive complex
rtp04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109920441
03083 Polycomb repressive complex
109920441
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
109920441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109920441
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
109920441
Histone modification proteins
HAT complexes
HATB complex
109920441
HDAC complexes
Sin3A-HDAC complex
109920441
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
109920441
PRC2.2
109920441
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
109920441
Heterochromatin formation proteins
Other heterochromatin formation proteins
109920441
Chromatin remodeling factors
NuRD complex
109920441
NuRF complex
109920441
NuRF complex (fruit fly)
109920441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR75_1st
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_RFWD3
ANAPC4_WD40
Beta-prop_DCAF12
WD40_MABP1-WDR62_1st
Beta-prop_RIG_1st
eIF2A
MIOS_WD40
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
109920441
NCBI-ProteinID:
XP_020376059
LinkDB
All DBs
Position
27:379855..418706
Genome browser
AA seq
425 aa
AA seq
DB search
MTDKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVSRPEGKD
YSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAPDP
EGQGS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaaagaagcagcctttgatgatgccgtggaagaacgtgtcattaatgaagaa
tacaagatctggaagaaaaatactcccttcttgtatgacctggttatgactcatgctctg
gaatggccaagcctgactgcacagtggttgcctgatgtttctagacctgagggaaaggac
tacagtgttcacaggctcgtgctgggaacccatacatctgatgagcaaaaccatttggtc
atagccagtgttcagctaccaaatgatgatgcacagtttgatgcttcacattacgatagt
gaaaagggagaatttggtggatttggttctgttagtggaaaaatagagattgaaataaaa
ataaatcatgaaggggaagtaaatcgtgctcggtacatgcctcagaatccttgtattatt
gctaccaagactccatccagtgatgtgttggtctttgactatacgaaacacccttccaaa
ccagatccctctggtgagtgcaatccagatcttcggttacgtgggcaccagaaagaaggc
tatgggctctcatggaatccgaatctcagtggccatttacttagtgcttcagatgatcat
actatctgcttatgggatattagtgctgtacctaaagaaggaaaagtagttgatgcaaaa
actatctttactggtcatacagcagtagtagaagatgtgtcatggcacttgctgcatgag
tctctgtttggttcagtggcggatgatcagaagctaatgatctgggatacaagatctaac
aacacatctaagccaagtcactccgttgatgcgcatacagcagaggtcaactgtctctct
ttcaacccttatagtgaatttatattggcaactggttctgctgataagactgtagcattg
tgggatttaagaaatctgaaactaaagttacattcctttgaatcacacaaggatgaaatc
ttccaggttcagtggtctcctcataatgaaacaatcctggcatcaagtggaacagatcgc
agactgaatgtatgggatttgagtaaaattggagaggaacagtcacctgaagatgctgaa
gatggtcctccagaactgttgtttattcatggtggtcacacagctaagatctcagatttt
tcttggaacccaaatgaaccatgggtaatttgctctgtatctgaagacaatatcatgcaa
gtttggcagatggctgaaaatatttacaatgatgaagatcctgagggagctcctgatccg
gaaggtcagggctcatag
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