Rhincodon typus (whale shark): 109920474
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Entry
109920474 CDS
T06055
Name
(RefSeq) cadherin-23-like
KO
K06813
cadherin 23
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
rtp03037
]
109920474
04515 Cell adhesion molecules [BR:
rtp04515
]
109920474
Cilium and associated proteins [BR:
rtp03037
]
Primary cilia and associated proteins
USH complex and associated proteins
109920474
Cell adhesion molecules [BR:
rtp04515
]
Cadherins
Major cadherins
109920474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Fibulin_C
PCDH15_12th
PAP_fibrillin
Motif
Other DBs
NCBI-GeneID:
109920474
NCBI-ProteinID:
XP_048472294
LinkDB
All DBs
Position
34:complement(20934904..21040557)
Genome browser
AA seq
1746 aa
AA seq
DB search
MDLDGVATTTVLVNILDENDNHPAFRQPQYEITLDEGPFTEHSFNLTVSATDRDEGPNGT
VTYAIVDGNIHDTFTIHSITGQIEAVKELDYELCHGRYTLTITATDRCLNPLCRLTSTAT
VLVNVNDINDVVPKFLHTYEGPFDITEGQPGPRVWTFLADDQDSGPNGQVEYSIIAGDPL
NEFIISPVEGELRVQRGAELDRESIAFYNLTIMGKDRGTPALSSTVLVGIHVLDVNDNDP
VLQNIPRNCTFSENTAVSTSITRILATDIDSGYNALLTFSITAGNIENAFFINETTGVIY
VNRPLDREQIAEYKLTITVKDNPENPRHARRDSGVLTISISDENDNSPTFTQTSYQAEIL
ENADTGTQITMLNGPILAFDSDEGLNAVVSYQLQGNTTEFFTIDWNTGIVSVAPGKSINR
ESLPNARLELTVIAEDIGQLKSVARLTVTVLDQNDNAPVFTPSSMTVHILENSPSGFSVG
QVTATDADTGVNQQLSYRIEGGALDKFIIDPRTGVIKVANGVTVDREERASYTLIAVVTD
SGTPSLSASATVNIVIDDVNDCRPEFISPIQTISISESVTVGSVIANITATDRDLHPQLE
YYIIELVAKDDTDEEVQEYQRAFDINFKTGAVFVRTPLNRELVATYTLTISVHDNASEVI
SHSVSVPNAKLTVNVLDVNDNPPRFRPFGVNTFTERILEGATAGTTLLSVSAVDPDKGPN
GLINYELLNLPPGDYIRLEDPAAGKIVASRTVDYEEVQWLNFTVRAVDHGSPPRSVEVPV
YLQIKDVNDNNPVFGQTSYQKPVFEDVSLGTVILQVSAEDADDGSFSQIEYSLVDGEGRF
GINPTTGDIYILAALDREKKDHYTLTAVAKDNPGDNPSNRRENAVQVLVTVLDVNDYRPQ
FSKNVFSTSVYENEPGGASVATMTATDLDEGENAVLQYSIQGPGVEAFRIDEDTAVITTT
RLLESYERFNLTVVATDRGRPPLWGTTLLTIEVIDVNDNRPIFIRPPNGTILHIMEERDA
GFNVYEVLATDNDEGLNGAVRYGFLKTAVNRDWEYFSIDPLSGIINTTVRLDRERQAVYN
LILLAYDLGHPVPYETTQLLQVALDDIDDNEPLFLKPPRSLQYQLLFVAEHSDPATIVGN
VTGATDADEGSNAVVYYFIAAGDPDNNFQLNRDGLLKVLNDLDRETNPFYAIVVKASSNP
NWKPPTGQNQLFDPSTDLTLQEVRIFLEDIDDQPPRFIKSEYTAGVATDAKVGSELVRVE
AYDADIGNNSLVFYQIVNIRYYQLQFNESEDVGNVFIIGEQDGIVRTFDLFTAYNPGYFL
VDVMVSDLAGHNDTSVIGIYILRDDQRVKIVINEIPEKVREFEEEFIKLLSNITGAIVNT
DDVQFHVDQKGRVNFAQTDVLIHVVDRESNRILDVERVIQMIDENKEQLRNLFRNYNILD
VQPAVTVRAANDMTSLQMAIIILAVLLFLATMLFIFMNWYYRTVHKRKLKAIVAGSTGNQ
GFMDILDMPNTNKYSFEGANPVWLDPFCRNLELAAQAEHEDDLPENLSDITDLWNSPART
HGTFGRAPPSSKLEDDRYLRAAIQEYDSIAKLGQIMREGPIKGSLLKVVLDDYLRLKKLF
AARLAHKSTASGDRSSVVELIPSDVEDDDEKPPSRGTLKFKHRHPVELKGPDGIHVVHGS
TGTLLASDLNSLPEDDQRVLVRSLETLNTESGSYVDRNARTESAKSTPLHKARERVMEIP
LEITEL
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atggacctagacggggtggcgacgacaacagtgcttgtaaatattttggatgagaatgac
aatcaccctgcatttcgacaaccgcaatatgaaatcaccttagatgaagggccattcacc
gagcattctttcaacctgacagtgagtgcgacagatcgagatgaaggcccaaatgggacg
gttacctacgccattgtagatggcaatattcatgacacgttcaccatacacagtatcaca
ggtcagatcgaagcagtgaaggaactggactatgagctatgccatggccgctacactctc
accattacagccactgaccgctgtctgaatccactgtgccgtctgacatctacagccact
gtactagtcaacgtgaatgatatcaatgatgtggtgccaaagtttcttcacacttatgag
ggtccatttgacatcactgagggtcaaccaggccccagagtatggacgttccttgcggat
gaccaagattccggcccaaatgggcaagtagaatatagcatcatagcaggagatcccctt
aatgaattcattatttctccagtagaaggggagctccgtgtgcaaagaggtgccgagttg
gatcgagaaagcattgcattttataacttaaccattatgggcaaagacagaggcacacca
gctctgagcagtacggtcctggtgggcattcacgtcctggacgtaaatgataatgatcct
gtgctccagaacattccgcggaactgcaccttcagtgaaaacacagccgtgtccacaagc
attaccagaattttggccactgacattgacagtgggtacaatgccctcctgacctttagt
attactgcaggaaacattgaaaatgccttcttcatcaatgaaacaactggagtcatttat
gtcaacagaccattggatagagagcagattgctgaatacaagctcaccatcacagtcaaa
gacaacccagaaaacccaagacatgctcgaagagattctggcgtactgaccatctccatc
tcagacgagaatgataacagtcccacctttacgcagacgtcatatcaagctgaaattctg
gagaatgcagacacaggtacacaaatcaccatgctgaatggacctattttagcttttgac
agtgatgaaggactcaatgctgtcgtcagttaccaattacagggtaacacaactgaattc
ttcacaatagactggaacactggcattgtctctgtcgcaccaggaaaaagtattaacaga
gagtcattgcctaatgcaagactggaattgactgtaatagcagaagatattggtcaactg
aagagtgtggctagactcactgttacagtcttggatcaaaatgacaatgcaccagtcttt
accccttcttcaatgactgtccacattctggaaaacagcccctcaggtttcagcgttggc
caggtgacagcaacagatgcagatactggagtgaaccagcagctgagttaccggatagag
ggaggtgctctggataagtttatcatcgaccctcgcacgggagtcatcaaagtggccaat
ggagtaacggtggaccgagaggaaagggcgtcctacacactcattgcggttgtgacggac
agtggtaccccatcattgtcagcgagtgccactgtgaacattgtgattgatgacgttaat
gattgccgtcctgagttcattagccctatccaaaccatcagcatcagcgagtcagtgact
gtcggttctgtcatcgcaaacataacagccacagatcgggacctccaccctcagctggag
tattacattatcgagcttgtggctaaggatgacactgatgaagaggtacaggagtatcaa
agggcctttgacatcaattttaaaacaggtgctgtgtttgtgagaacgcctttgaataga
gagctggtagctacctacacacttaccatttcagtacacgacaatgccagtgaggtgatc
agtcattctgtcagtgttcccaatgcaaaactgacagtgaatgtcctggatgtgaatgac
aatcctcctcgattcagaccgttcggggttaatactttcactgagaggattctggaagga
gcaacagctggtacaacgctactctctgtctcagctgtggatcctgataaaggacccaat
ggactgatcaactatgaactcctgaatctccctcccggggactacatcagattggaggat
cctgcagcagggaaaatagttgcaagcaggacagtggattacgaagaggttcagtggctg
aatttcacagtgcgggcagtggatcacggatcaccacctcgatctgtggaggttccagtg
tatttacagatcaaggacgtcaatgacaataaccctgtctttgggcagacatcctaccag
aaaccagtgtttgaagacgtctccctaggcacagtgattcttcaagttagtgcagaggat
gcagatgatggcagcttctcacagattgagtacagccttgtggatggagagggcaggttc
ggaatcaatccaaccacgggggatatttatattctggctgcactcgatcgagagaaaaaa
gatcattacactctaacagctgttgccaaggacaacccaggtgataatccaagcaatcgc
agagagaatgctgtccaggtcctggtgactgttctggatgtcaatgactatcgtccccag
ttctccaagaatgtcttcagcaccagcgtttatgagaatgaaccaggaggagcttctgtg
gctaccatgactgcaacagatctggacgaaggggagaatgcggtcttgcagtatagtatt
cagggccctggtgtggaggcttttaggattgatgaggacacagccgtgatcactaccacg
aggctcctggaatcctacgagaggtttaatttgacagtggtagccacagaccgtggtcgc
ccaccgctctgggggacaacattgctgacgattgaagtgattgacgtgaatgacaatcgg
cccattttcattcgaccacccaatgggacaatactgcacatcatggaggagagagacgca
ggctttaatgtgtatgaggtgctggccactgacaacgacgaaggtttgaatggagcggtc
aggtatggttttctgaagacagcggtcaacagagactgggagtatttcagcatcgaccct
ctgagtggaatcatcaatacgacagtgaggctggacagggagaggcaggctgtctataat
ctgattctcttggcatatgaccttgggcaccctgtgccctatgagaccacccaacttctg
caagttgctctggatgatattgatgataatgagcccctcttcctcaaaccaccgaggagt
ttgcagtaccagctgctgtttgtggctgaacattctgatcctgccaccattgtggggaat
gtaactggagcaaccgatgctgatgaaggatccaatgcagttgtctattatttcatagca
gctggagatcccgataacaacttccagctgaatcgagatgggctgcttaaggtattgaat
gatctggaccgagaaaccaacccgttctacgctatcgttgtcaaggcttccagtaacccg
aactggaaacccccaacggggcaaaaccagctctttgaccccagcactgatctcaccctc
caggaagtccgcatcttcctggaggatattgatgaccagccgccaaggttcatcaagtca
gagtacacagctggtgttgctactgacgccaaagtaggctccgagctggtcagagtggag
gcttacgatgccgatattggaaacaacagccttgtcttctatcaaattgttaacatccgc
tactatcagctccagttcaatgagtctgaagatgtggggaatgtcttcataattggggag
caggatggcattgtgaggacctttgacctcttcacggcctacaacccaggctatttcctg
gtggatgtcatggtttcggacctggctggacacaatgatacgtcggtgattgggatctac
atcctgagagatgaccagcgtgttaagattgtcatcaatgagatcccagagaaggtgcgg
gagtttgaagaggagttcattaagctgctctccaacatcactggcgccattgtcaacaca
gatgatgtgcagtttcacgtagatcagaagggccgagtgaattttgctcagaccgacgtg
ctgattcatgtggtggatagggaatcaaaccggatcttggatgtggagagggtaatccaa
atgatcgacgaaaataaggaacagcttagaaatctcttccggaattacaacattctcgat
gtccagccggctgttactgttagggcagctaatgatatgacgtctttacagatggcgata
attattctggcagttttgctgtttctggctaccatgctgttcatctttatgaactggtat
tacaggacagtgcacaaaagaaagttgaaggctattgtagcaggctccactggtaaccaa
gggtttatggacatcctggacatgccaaacacaaacaagtattcgtttgaaggggcaaat
ccagtctggcttgatcccttctgcagaaacttggaacttgctgctcaggctgaacatgaa
gatgatctgccagagaatctcagcgacatcactgacctctggaatagtccagccaggacc
catggcacgtttggccgtgcaccaccttcatctaagctggaggatgatcgatatttacgt
gcagccatacaggagtacgacagcatcgcaaaacttggacaaatcatgcgagaaggtccc
atcaagggctcccttttgaaagtggttctggatgactacctgcggctgaagaagctgttt
gcagctcgattggctcacaaatccactgccagtggggatcgctcatctgtggtggagctg
attcccagcgacgtggaagatgacgatgagaaaccccccagtcgtggaactctgaagttc
aagcatcggcaccctgtggagctgaaaggtcctgatggcattcatgtggttcatggcagc
actggcaccttgctggcctctgatctgaacagtctgcctgaagatgaccagagggtcttg
gtcagatccctggaaacgctgaacacagagagcgggagctatgtggacaggaatgccagg
acggagtctgcaaagtccacgccattgcacaaggcgagggaacgggtgatggagattcca
ctggaaatcacggagctttga
DBGET
integrated database retrieval system
