Rhincodon typus (whale shark): 109920626
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Entry
109920626 CDS
T06055
Name
(RefSeq) transcription factor SOX-21-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109920626
Transcription factors [BR:
rtp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109920626
BRITE hierarchy
SSDB
Ortholog
Paralog
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
109920626
NCBI-ProteinID:
XP_048453993
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All DBs
Position
6:64994242..64997284
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AA seq
238 aa
AA seq
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MSKAADHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLSESEKRPFIDE
AKRLRALHMKEHPDYKYRPRRKPKTLLKKDKFAFPLPYLADQDGLKAAAGLPPSGLPDSL
LGSADKTRLLFPHPASPYPLFDTSPLGSKLSELSSGSLPYGSPLAYQSGAAAAAAAAAAF
SGAHTHSHPSPGNPSYILPCNCSTWPPSTLQPPLAYILLPGMNKPTIEPYPAAYAAAL
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagccgcggatcacgttaagcggcccatgaacgctttcatggtgtggtcccgg
gcgcagaggagaaagatggcccaggaaaaccccaagatgcacaactcggagatcagcaag
aggctgggagctgagtggaagttgctcagcgagtccgagaaacgacctttcattgacgag
gccaagcggctgcgggcgctgcacatgaaagagcacccggattataaataccggccccgc
cgcaaacccaagaccctgctcaagaaggacaagttcgccttccctctgccttatctagcc
gatcaggacggcctgaaggcggcagcggggctgccgcccagcgggctgccggactctctg
ctgggctcggccgacaaaacccggctgctgttcccgcaccccgctagtccgtacccgctc
ttcgacaccagcccgctgggttccaagctgagcgagctgtcctcaggctcgctgccgtac
gggtcgccgctggcttaccaaagcggggcggccgcggccgcagcggcggccgccgccttc
agcggagctcacactcacagtcacccgtcccccgggaaccccagctacatcctgccttgt
aactgcagcacctggccgccctcaaccctgcagccacccctggcttacatcctcttgccc
gggatgaacaaacccacgatagaaccgtatcctgccgcttatgcagctgccttatga
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integrated database retrieval system
