Rhincodon typus (whale shark): 109920840
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Entry
109920840 CDS
T06055
Symbol
pdlim2
Name
(RefSeq) PDZ and LIM domain protein 2 isoform X1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109920840 (pdlim2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
109920840 (pdlim2)
Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
109920840 (pdlim2)
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Ortholog
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GFIT
Motif
Pfam:
PDZ
DUF4749
LIM
PDZ_6
PDZ_2
zf_C2H2_13
DmmA-like_C
Motif
Other DBs
NCBI-GeneID:
109920840
NCBI-ProteinID:
XP_020376496
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All DBs
Position
40:16065513..16079437
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AA seq
367 aa
AA seq
DB search
MSRTVKLCGPGPWGFRITGGRDFHKTIAVSKVTSGSKADLVDLRLGDQITSINGAETSDM
LNMEAQNRIRMCEGDLILNVERPEAGSPGLSDGSPTDTFLAQRFQTVLQPLRDENKNLVE
RGWSAGCNPRSPNLSPMRSLSLAPDGKSVSPITNRRSVSPVWSSEEKEAAFRGNTVPKGF
QGGIRGHKSLSPISSSCSVPRVSLSTDSSPSEVRHQTEGSHSPSSAALSKGVSDRRSPNR
IDKDSEVYKMIQENRAAKEPPRQSNRFRQLQEALDADQDGAAVQFPGRFSPLAPNTPVPK
YRMCEKCGSNIMMEAVKIRDGCYRHQQCYVCTDCGLNLGMRGHFWFRDQMYCEKHAQKRF
QEAEGSS
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggacggtgaaactgtgtggtcccggaccctggggattccgcattaccggcggg
agagactttcacaaaaccatcgctgtctctaaggtgaccagtgggagcaaagcagattta
gtggatctccgccttggagaccagatcaccagcatcaatggggctgaaacctctgacatg
ctcaacatggaggctcagaacaggatccgaatgtgtgaaggggacctcatcctcaacgtt
gagaggccagaggcaggttcccctggactctctgatggatctcccactgacaccttcctt
gcgcagagattccagactgtcctacaaccgctcagggacgagaataagaatcttgtagag
agagggtggagtgcaggctgcaatccacgatccccaaacctttcgcctatgcgatccctc
tctcttgcacctgatgggaaatccgtctctccgatcactaacaggaggtctgtatcccca
gtttggagctcggaagagaaggaggcagcatttcggggaaatacggtgccaaagggattc
cagggaggaatcaggggccacaaaagcctttctcccatctccagttcctgctctgtaccc
agggtgagcctgtccacagactcgagtccctcagaggtgaggcatcagactgaaggatca
cactctcccagttccgctgctctgagcaaaggggtgtcagaccgtcgttccccaaatcga
atcgacaaagactcggaggtttacaagatgatccaggagaatcgagctgcgaaggaacct
cctcgacagtcgaaccgtttccgtcagcttcaagaggcgctagatgcagaccaggatgga
gcagcagttcagttccctggaagattctctcccttggccccaaacacaccagtgcccaag
tatcgtatgtgtgagaaatgtggatcaaacattatgatggaggcggtgaagattcgagat
ggctgttaccggcaccagcagtgttatgtctgcactgactgcggtctcaacctcggtatg
agaggccatttctggtttcgtgatcagatgtactgtgagaaacacgctcagaaacggttc
caggaagcagagggcagctcttga
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