Rhincodon typus (whale shark): 109920907 Help Entry 109920907         CDS       T06055                                  Symbol nfasca Name (RefSeq) neurofascin homolog (chicken) a   KO K06757   neurofascin Organism rtp  Rhincodon typus (whale shark) Pathway rtp04514   Cell adhesion molecule (CAM) interaction rtp04517   IgSF CAM signaling Brite KEGG Orthology (KO) [BR:rtp00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04514 Cell adhesion molecule (CAM) interaction     109920907 (nfasca)    04517 IgSF CAM signaling     109920907 (nfasca)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:rtp04515]     109920907 (nfasca) Cell adhesion molecules [BR:rtp04515]  Immunoglobulin superfamily   L1 family    109920907 (nfasca) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Ig_3 I-set fn3 Ig_2 ig Ig_VEGFR-1-like_5th Pur_ac_phosph_N V-set FN3_DSCAM-DSCAML_C Bravo_FIGEY C2-set_2 Ig_5 Ig_PDGFR_d4 Fn3_PBP1 Ig_6 BiPBP_C Herpes_gE_N DUF4998 Motif Other DBs NCBI-GeneID:  109920907 NCBI-ProteinID:  XP_048467957 LinkDB All DBs Position 25:complement(7651570..7778193) Genome browser AA seq 1349 aa AA seqDB search MLPRDRFLLNTGLVLIVSLCHLVTSIEVPLDPSLRRELAQPPTITKQSPKDYIVDPRDNV VIYCEGKGNPTPAFSWTRNGKFFNVAKDSRVSMRSRSGTLTMDFRYSGRAEDYEGEYQCS ARNDYGTALSHKIFLRVSKAPLWRKEVLDPFQVQEGAPLILPCQPPAGLPPPVIFWMDSM MESIPQNKRVSQGLNGDLYFSNVMRSDARFDYICNARFLFTHTIQQKNPITIKVMTMDTS YESVPTILNETELSSARPIMEQIPKFMSPMGTSSSRIILRGEDLLLECIASGIPTPDIIW YKKGGELPWPKVRIENYNKTLRITDVSEENSGEYFCLASNKMGSIRHTITVRVKAAPYWL NEPQNLVLAPGEYGRLVCQANGNPKPNIQWLVNGEPIEKVRQSPGREIDGDTIIFREAQI GSSAVYQCNASNEHGYLLANAFVSILDVQPRILSRRNQMVKVIENNRTRLSCQFFGSPIP TLRWFKDGQGNNLYGGNYIIHDNGTLELRRARKVDEGTYTCVATNILGKAENRVRLEVKD PTRIIRAPESITVKRSFAAKFECKVRHDPTLRVTVTWLKDDKVLYLPWRMKKDDDSLTII NVSERDEGIYTCIASTELDSDSAKARLTVLVVPSTQITPLAAVLKDRPDAPRDLELTDPA DRSVRLTWIPGDDNNSPITEFIVQFEENKFQPRKWHNLTRIPGNINSAVLQLSPYVNYQF RVIAVNEVGEGAPSLPSERYQTTGTAPEINPSDVRGAGISKSSMQISWTPLNGTQISGPN LKYIVSWRQKDVGGEWSTVTVPRASYIVSPTPFFTPYEIKVQAVNDFGVGPEPRIIIGYS GEDFPIAAPTSLSGRIINSTAILLQWRSLPPDTIQGYLIGHRIQYWNEGSLLKTNQYRSR VQVMESPGQRPRAIVSGLQPYHAYKLQVAAVNGRGRGPWSEEFAINTTEGVPGKPSHLRI RQPDLESITLQWGSPRDPNGIITGYVIMYHPLTGSRSRRNSTIPRLGPDVTSYKLERVDA NTKYRFYVFAQTRQGLGEAIVLDSPDFENEVTPTPEIAITIGVVSRFTPVPTTPAATTAI TTISTTTDTTSAAPPTVIITESAQPAVTGTHIYVEAHGRIWNLITSADNDSINITWSHTF PKEMAMFTVEYIHSNGTMKQEHVKAGQNAVRLLGLAPGTLYKVRVFSTQFPTITSDTSTI ETSPAFTNSHVDIATQGWFIGLMCAVALLVLILLIVCFIKRSRGGKYPVKTTEENRPSQD DNGYLSLESDNEDSKKPQGSQSSVDGTVKQEESDDSIVIYGDGDGNSRFGEDGSFIGQYT VKKDKEETEGNDSSEATSPVNPAYSLAQM NT seq 4050 nt NT seq  +upstreamnt  +downstreamnt atgttgccaagggacagatttctcctgaacactggcttggtgcttattgtgtcactgtgc cacctggttacatccattgaagtccccctagatccaagccttcggagagagttggcccag cctccaaccatcaccaagcagagtccaaaggattacattgtagatccacgagataacgtt gttatttactgtgaagggaaggggaacccaactcctgccttctcgtggactcgaaatgga aagttcttcaatgtcgcaaaagattccagagtttcgatgcgatcgcggtcagggaccctc acgatggactttcgttacagtggccgggcagaggactatgagggggaataccagtgctca gccagaaatgactatggaaccgcactctcccacaaaatattccttcgagtctccaaagca ccgctttggcgtaaggaggtcttggaccctttccaggttcaggaaggagcaccgttgatt cttccatgtcaaccccctgctggacttccccctcccgtcatcttctggatggacagcatg atggaatcgatccctcagaataaacgtgtgtctcagggcctgaacggagacctgtacttc tccaatgtgatgcgtagcgatgctcgctttgattacatctgtaatgcccggttcctcttc acacacaccattcaacagaaaaacccaatcaccatcaaggtgatgaccatggataccagt tatgaatcagtgccaactattctgaatgaaactgaattgtctagtgctcgaccaatcatg gagcagattccaaagttcatgtcaccaatggggacctccagcagcagaattattctccga ggggaagacctgttactagaatgcatcgcttcgggaatacccacaccagatataatttgg tacaagaaaggtggtgaactgccttggccaaaggtgcgaattgaaaactacaacaagaca ttgaggatcactgatgtttctgaggagaactcgggagagtatttttgcttggcatccaat aaaatgggaagcatacggcacacgatcacagtgagagtgaaagctgctccatattggctg aatgagccccagaatttggtgctggctcctggggaatacggcagattggtgtgtcaagcc aacggaaaccccaagcctaacatccagtggctggtgaatggggaacccatagaaaaggtc cgtcagagtccaggccgtgaaattgatggtgatacaattatcttccgagaggcacagata ggaagcagtgccgtgtaccaatgcaatgcctctaatgagcatgggtacttactggccaat gcgtttgtcagtatccttgatgttcagcctagaatattgtcccgacgaaaccaaatggtc aaagtgatagaaaataaccgaacaaggctcagttgtcagttcttcggttcaccaatcccc accctgcgatggtttaaggatgggcagggcaataatctttatggaggcaactatattatc catgacaacgggactttggaattgcgacgagcacggaaggttgatgagggaacctatacc tgtgtagcgaccaacatactgggcaaggctgagaacagggtgcgactggaggtcaaagac cctacaaggatcataagggctccagaatctatcacagtgaagaggtcatttgctgcaaag tttgaatgtaaagtgaggcacgatccaacattaagagtgacggttacctggctcaaagat gacaaagttctgtatttgccatggaggatgaagaaagatgatgactctttaacaatcatt aacgtgtctgaacgagatgaagggatctacacatgtatagccagcacagaactggacagt gactcagccaaggcacgcctcactgttctagttgtcccctccacccaaattaccccgctt gctgctgtgttgaaagatcgtcctgatgctccccgagatctggaactaacggatccagca gatcgaagtgtaagattgacatggattcctggtgatgacaacaacagtccaattacagag ttcattgtgcagttcgaagagaacaaatttcagcccagaaagtggcacaatttgacccga atcccaggcaacatcaactctgcagtattacagctctctccgtacgttaattaccagttc agggtgatagcagtgaatgaagttggagaaggagcccccagtttgccttctgaacgttat caaacaactggaacagctccagagatcaatccatctgatgttagaggggcaggaatatca aaatcaagcatgcaaatcagttggacgcctctgaatggaacgcaaatcagtggccccaat ctcaagtatatagtcagctggagacaaaaggatgtgggtggggagtggtcaacagtcaca gtccccagggccagttacattgtctcaccaacacccttcttcacgccctatgagattaaa gtgcaggcagtgaatgactttggagtaggtccggaaccaagaattataattggatactcg ggtgaagactttccaattgcagcgcccacaagcctttctggaaggattattaacagcaca gccattctactgcagtggaggtcattgccaccagacacgattcaaggatatctcattggc cacagaattcagtattggaatgagggaagtctgctgaagaccaaccaatacaggtcacgt gttcaggtcatggagtctcctggacagcgtccgcgtgccatagtatcaggcttgcagcca tatcatgcctataagctacaggtggcagcagtcaatggtagaggacgtggaccctggagt gaggagtttgcgataaacaccacagaaggagttcctggaaaaccgagtcacctcagaatc cgacagccagacttggagagcattacattgcagtggggttctcctcgtgatccaaacgga atcatcaccggctatgtgatcatgtaccacccactgactggttcacggtcaagacgcaat tccaccattcccaggcttgggcctgatgtgaccagttacaagttggagagggttgatgca aacaccaagtacaggttctatgtcttcgctcaaacccgccaaggactcggagaagcgatt gtattggattcgcctgactttgaaaacgaagtcacccctactcctgagattgcaataaca attggagtcgtgtcaagattcacacctgtcccaactactcctgctgcgaccaccgccata actaccatatctaccacaaccgacactaccagcgctgctcccccgactgttatcatcact gagtctgcccaaccagctgtcacaggcacccatatatatgtggaagctcacggtagaata tggaatctcattacatcagcagacaatgactctatcaatatcacgtggagtcacaccttc ccgaaggaaatggcaatgtttaccgttgaatacattcacagtaatggcacgatgaagcaa gaacatgtcaaagcaggtcagaatgctgtccggctcctgggtctagcacctggcacgctg tacaaagtcagggtgttttccacccagttcccaacaatcaccagtgataccagcactatt gagaccagcccagctttcactaatagtcatgtggacatcgcaacacagggctggttcatt ggcctgatgtgcgctgtggcgctcctggtgctgattctgctgattgtgtgcttcataaag aggagcagaggaggcaaatacccagttaagactacagaagaaaacaggccctcgcaagac gacaacggatacctatctctagaaagtgataatgaagacagcaagaagcctcaaggcagt cagtcttcagtggacgggacagtgaaacaggaggagagcgatgacagcatagtcatctat ggcgatggggatggtaattctcgtttcggtgaggacggctccttcatcggacagtacacg gtcaagaaggacaaagaggagacagagggtaatgacagctccgaagctacatccccagtc aatcctgcctattccttggcacaaatgtga

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