Rhincodon typus (whale shark): 109920951
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Entry
109920951 CDS
T06055
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4 isoform X1
KO
K07573
exosome complex component CSL4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109920951 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109920951 (exosc1)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
109920951 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
109920951 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
109920951
NCBI-ProteinID:
XP_020376596
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All DBs
Position
20:complement(42723318..42738240)
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AA seq
194 aa
AA seq
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MAPLKLCIPGERLCSTEDGTPGNGTYSRHGYIFASLAGYVVKENDNGMVPVISVVRDSEP
QLLPEVGVVVTCKVTSINPRFVKVHILYVRSTPLKGTFRGTIRREDIRATEKDKIEVYKC
FRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSEAGEQMVPISWCEMQCPKSHGKE
FRKVARVQPEFLHT
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgctgaagctctgcatcccaggagagagattgtgcagcactgaggacggcact
cctggtaatggcacatactccagacacggatatatttttgcatctttagctggctatgtg
gtgaaggaaaatgacaatggaatggtgccagtcatatcggtagttcgggactcagagcct
cagctcctgccagaggttggtgttgttgtaacatgcaaggtgaccagtattaaccctcgg
tttgtcaaagtccatattttatacgtacgatccactccactgaaagggacatttcgagga
accatcagaagagaagatattcgagcaacagaaaaggacaagatagaggtttacaagtgc
ttcaggcccggtgatattgttttagcaaaagtgatttctctaggtgatgctcagtccaac
tacctgctgactacagcagagaatgaacttggtgtagtagttgcacacagtgaggcaggt
gagcagatggttcccatcagctggtgtgagatgcaatgccccaaatcccatgggaaagaa
ttcaggaaagtagctcgtgttcaacccgaattccttcacacctga
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