Rhincodon typus (whale shark): 109921140
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Entry
109921140 CDS
T06055
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109921140 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109921140 (smarcd1)
03036 Chromosome and associated proteins [BR:
rtp03036
]
109921140 (smarcd1)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109921140 (smarcd1)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109921140 (smarcd1)
PBAF complex
109921140 (smarcd1)
GBAF(ncBAF) complex
109921140 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
DivIC
Motif
Other DBs
NCBI-GeneID:
109921140
NCBI-ProteinID:
XP_048474821
LinkDB
All DBs
Position
41:8958896..9003577
Genome browser
AA seq
498 aa
AA seq
DB search
MAARGFQTMSPGAAAAMAAGPGPGQAQGTGQAPGRIAGAQQQNMFRSAMPGQGYPRPGMP
PGSRMPPQGASMGPPGPSYGGSPAVRPGVPQSMMDQSRKRPAPQQIQQVQQQAAQNRNHN
AKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKL
RIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDSAVSKYDATKQKRKFSSFFKSLVI
ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA
RLLGIHTQTRPVIIQALWQYIKTHKLQDSHEREFINCDKYLQQIFECQRMKFSEIPQRLH
ALLMPPEPIIINHIISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDN
KIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKSMTDVVGNPEEERRAEFY
FQPWAQEAVCRYFYSKTD
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgaggcttccagacaatgagcccgggcgcggcggctgctatggcagcgggt
ccggggcctggccaagcacaagggacggggcaggccccgggcaggatagcaggagctcag
caacaaaacatgttccgttcagccatgccaggccagggatacccgcgcccagggatgcct
ccgggcagccgcatgccacctcagggtgcttccatgggtccgccgggtccttcgtatggt
gggagcccagctgtgcgaccaggcgtgcctcagtcaatgatggaccagtctcgcaaacgg
ccagcgcctcagcaaattcagcaggtgcagcaacaagcagcccagaaccgcaatcacaat
gcaaagaagaagaagatggccgataaaattctacctcagaggattcgggaacttgtgcca
gagtctcaagcctacatggatttgctggcatttgagaggaagttggaccagactataatg
aggaagcgcctggacatccaggaagcattgaaaagaccaataaagcaaaagcgaaagctt
cgtatatttatttctaatacgttcaaccctgcaaaaccagatgcagaagatggcgaagga
actgtggcatcctgggagcttcgagtggaaggcaggcttcttgaagactcagctgtatcg
aagtatgatgctactaaacagaagcggaagttttcctcattcttcaaatcccttgtgatt
gaactagataaagatctctatggacctgacaaccacctggttgagtggcataggacagcc
acaactcaagagactgatggcttccaggtgaaaagaccaggagatgtgaatgtgcgctgc
accgtattactgatgctagattaccagccaccccagtttaaactggatcctcgattggcg
cgtctgctgggcatccacactcagactaggcctgtcattatccaggctctctggcagtac
attaagacacacaagctgcaggactcccatgagcgggagttcatcaactgtgacaaatac
ctccagcagatctttgagtgtcaacgaatgaagttctcagaaattcctcagagactgcat
gctctgctgatgccacctgagcccatcatcatcaaccatattatcagtgtggacccaaat
gaccagaagaagactgcatgttatgacattgatgttgaagtggatgacacactaaagact
caaatgaattcatttctcctttctactgcgagccagcaggaaattgctgctctcgataat
aagatccatgaaacaatagagaccattaaccagctcaagacacagagggagttcatgtta
agttttgccagagatccacagggcttcatcaatgactggttgcagtcccagtgccgtgac
ctgaagtctatgactgatgtggtaggaaacccagaggaggagcgcagagcagagttctac
ttccagccctgggctcaagaagctgtttgcagatacttctattcgaagacagattaa
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