Rhincodon typus (whale shark): 109921342
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Entry
109921342 CDS
T06055
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109921342 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109921342 (ddx5)
03009 Ribosome biogenesis [BR:
rtp03009
]
109921342 (ddx5)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109921342 (ddx5)
Spliceosome [BR:
rtp03041
]
Complex A
U1 snRNP components
U1 related factors
109921342 (ddx5)
Complex B
109921342 (ddx5)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
Pre-60S particles
Helicases
109921342 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
NPHP3_N
BNIP2
Motif
Other DBs
NCBI-GeneID:
109921342
NCBI-ProteinID:
XP_048466920
LinkDB
All DBs
Position
23:6645913..6656940
Genome browser
AA seq
652 aa
AA seq
DB search
MPGYDRGDRSRERGGFGSGGPRFGGSRNAPPPGRKFGQPGEKLRKRKWDLDELPKFEKNF
YVEHVDVMNRPVQEIEQYRRNKEITVKGLACPKPVFNFVEASFPTYVLDVLMQQNFTEPT
AIQAQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQQVAHDYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKEYV
QINIGALELSANHNILQIIDVCQEVEKDDKLLRLMEEIMSEKENKTIIFVETKRRCDELT
RRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDY
PNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQANDLISVLREANQAINPKLIQMVEDR
GSGRSRGRGGYKDDRRDDRRDRFSSSNRGGGYNGFRNRDSMDRVYGSGGRENGFNSQSYT
AAGQNAFGSGKFGSTNSFGSISRFGNSSSYPGSVNQGAGSFGSQSQNGYKAGSKVQQFGG
NHSGPNAMQSNGIGQQASVGAQYQYPPPPLMGMGFQAQTGYPMPLAYGGMQK
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgcctggttacgatagaggcgatcggagtcgggaacgtggcgggttcggttcgggtgga
cctcgcttcggtggtagcaggaacgcgcctccgcccggcaggaaattcgggcagccgggg
gagaagctgaggaaaagaaaatgggacctggacgagctgcccaaattcgagaagaacttc
tacgtcgagcacgtagatgtgatgaaccgacctgtgcaagaaattgaacaatatagaaga
aacaaagaaatcacagtaaaaggacttgcttgccctaaaccagttttcaactttgtcgaa
gcaagttttccaacatacgtattggatgttctcatgcagcagaatttcacagagccaact
gctattcaggctcaaggttggcctgttgcacttagtggcaaggatatggttggcattgcg
cagactggatctggtaaaacattagcttacttgctgcctgccattgtccacataaaccat
cagcctttcctggaacgtggagatggtcccatatgtttggttctggcaccaaccagagag
ctagctcaacaagtacagcaagtggcacatgattatggaagagcatcccgtctaaaatca
acatgtatttacggaggcgcaccaaagggcccacagattcgggatcttgaaagaggtgtg
gaaatctgtattgcaacacctggtagattgattgactttttggaagctggtaaaacaaat
cttcggagatgtacatatctggtacttgatgaggctgatcgcatgcttgacatgggattt
gaaccacagatccggaagattgttgaacaaatcaggcctgacagacagaccttgatgtgg
agcgcaacctggcccaaagaagttcgacagttggctgaagatttcttgaaggaatatgtt
cagattaatattggtgctttagaacttagtgctaatcacaacatcctgcagattatcgat
gtgtgccaagaggttgagaaagatgataagttgctaaggttgatggaggagataatgagt
gaaaaagaaaacaaaactatcatttttgtagagaccaaacggagatgtgatgagcttaca
cggcgaatgaggagagatggatggccagcaatgtgcattcatggtgacaagagtcagcca
gagcgtgactgggttctaaatgagtttcggtcaggcaaagcaccaatccttattgccaca
gatgttgcatctagaggtttagatgttgaagatgtgaaatttgtcatcaattatgactac
cctaactcctctgaagactatattcaccgcattgggcgaactgcccgcagttccaaaact
ggcacagcttacacgttctttactcctggcaacataaagcaagcaaatgaccttatctct
gtgcttcgtgaagcaaatcaggctatcaacccaaagctaattcagatggtagaagacaga
ggttcaggtcgttccaggggtaggggtggatataaagatgatcgccgtgatgaccgaaga
gacagattctctagttctaacaggggtgggggttataatggttttagaaatagggatagc
atggacagggtatatggatctggaggcagggaaaatggttttaactctcaaagttatacc
gcagctggacaaaatgcatttggttctggaaaatttggctcaacaaacagctttggaagt
atatctcggtttggaaattcctccagttatccaggatctgtgaaccagggagcaggttca
tttggcagtcaaagtcaaaatggttacaaggctggtagcaaagtccagcaatttggaggt
aatcattctggtccaaatgccatgcagagcaatggcattggtcaacaggcatctgtgggt
gctcagtatcagtatccacccccacctttaatgggaatgggtttccaggcacagactggt
tatcctatgcctcttgcttatggagggatgcaaaaataa
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