Rhincodon typus (whale shark): 109921440
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Entry
109921440 CDS
T06055
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03020
RNA polymerase
rtp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109921440 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
109921440 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109921440 (polr2a)
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109921440 (polr2a)
Enzymes [BR:
rtp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109921440 (polr2a)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109921440 (polr2a)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109921440 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
109921440
NCBI-ProteinID:
XP_020377064
LinkDB
All DBs
Position
45:1137545..1170675
Genome browser
AA seq
1955 aa
AA seq
DB search
MQGPPSGDSACPLRTIRRVQFGILSPDEMKRMSVTEGGIKYSETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLTKTMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQEGEEDLTKEKGHG
GCGRYQPRIRRVGLELYAEWKHVNEDSQEKKILLNPERVYEIFKRITDEECVILGMDPKY
AKPEWMILTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNNQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYRVERHMCDGDIVIFNRQPTLHKMSMMGHKVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFMDRGEVMNLLMHLSTWDGKVPQPSILKPRPLWTGKQIFTLVIPGHVNC
IRTHSTHPDEEDNGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHITFLEMGH
DITRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVIQLRYGEDGLAGECVE
FQNLASVKPSHKNFEKKFKLEYNNERSLRRTLQEDIVKEILSNAAIQNELEVEFERMKED
REVLRAVFPTGDSKVVLPCNLLRMIWNAQKIFHINTRTVTDLHPIRVIEGVKELSKKLII
VNGEDPLSRQAQENATLLFNIHLRSTLCSRRMTEEFRLSGEAFEWLLGEIEAKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPDPQNTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEQEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
ASAHGEMDPMKGVSENIMLGQLAPAGTGSFDLLLDAEKCKYGMEIPTNIGGLGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY
TPTSPNYSPTSPSYSPTSPSYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQS
PTYTPSSPSYSPSSPSYSPTSPKYSPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYS
PTSPTYSPTTPKYSPTSPTYSPPSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSP
KGSTYSPTSPGYSPTSPTYSLTSPAISPEDSDEEN
NT seq
5868 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggacctccttccggagacagcgcatgcccactgcgcaccatcagaagggtccag
tttggcatcctcagtccagatgagatgaaacgaatgtctgtgactgagggaggaataaag
tactctgagaccaccgaaggaggccggcccaagttgggtggcctgatggaccctcgccaa
ggtgtcattgaaagaactggaagatgccagacttgtgcaggtaacatgaccgaatgtcct
ggtcactttggacatatcgaactggcaaagcctgtctttcatgttggctttcttacaaag
acgatgaaagttctccggtgtgtctgtttcttctgttccaagttgctggtagattccaat
aatcccaaaatcaaagacatcctgatcaaatcgaaggggcagccccggaaacgcctcact
catgtctatgacctgtgcaaagggaagaacatctgtgaggggggcgaggagatggacaac
aagttcggagtggagcaacaagagggtgaggaagatctcaccaaggagaagggtcacgga
ggctgtggtcgctaccagcctcgcattcggagggtgggcctggagttgtatgctgagtgg
aaacatgtgaacgaagactctcaagagaagaagatcctgctgaacccagagcgcgtgtac
gagatcttcaagcggatcacggacgaggagtgcgtgatcctgggtatggatcccaagtat
gcgaagccagaatggatgattctaacggttcttcctgtgccgccgctctctgtgcgtcct
gctgttgtcatgcagggctctgcccgaaaccaggatgacctgacccacaaactggctgac
attgtgaaaattaacaatcagctgaggagaaatgaacagaatggagccgcagctcacgtc
attgctgaggacgtcaaactcctgcagtttcatgtggccaccatggttgacaatgagctg
cctggactgccaagggcaatgcaaaagtcaggccgcccactgaagtccctcaaacagagg
ctgaaggggaaggaagggcgtgtccgtggaaacctaatgggaaaacgtgtggatttctca
gcacgtacagtcatcacgcctgatcccaacctctccatcgaccaggttggtgtgccacga
tccattgctgccaacatgaccttcccagaaatcgtcacgccattcaacattgacaggctc
caagagttggtgaggagaggaaacaaccagtatcctggtgccaagtacatcatccgggac
aacggtgatcgaattgatttgcgctttcatcccaaacccagtgaccttcatcttcaaatc
ggctacagagtggaaaggcacatgtgcgacggtgacattgtcatcttcaaccgacagccc
acgctgcacaaaatgtccatgatgggccacaaggtgcggatcctaccctggtcaaccttt
cgtctcaatctcagtgtgaccactccatacaatgctgattttgatggtgatgaaatgaat
cttcacttgccccagtccctggaaacccgagcagagatccaggagctggccatggtgccc
aggatgatagtcacccctcagtccaacaggcccgtcatgggcattgtgcaggacacactg
acagctgtgcgcaagttcaccaagcgggacgtcttcatggaccggggcgaagtcatgaac
ctgttgatgcatctctcaacctgggatgggaaagttccccaaccttccatcctgaaaccg
aggccgctctggactggcaagcagatcttcaccctggtcatcccaggccacgtcaactgt
attcgcacccacagcactcacccagacgaagaggacaatggcccttacaaacacatctca
ccaggtgacacaaaggtggttgtggagaacggagagctgatcatgggcatcctgtgcaaa
aaatcgctgggtacgtcagctgggtccctggtacatatcaccttcctggagatgggccat
gacatcacacggctgttctacagcaacatccagacggtcatcaacaactggttattgatt
gaaggacacacgattggtattggagactccattgctgatgctaaaacttaccaggacatt
cagaacaccattaaaaaggccaaacaggatgtgattgaggtcattgagaaagctcacaac
aacgagttggagcccactcctggtaacaccctgaggcaaaccttcgagaaccaggtcaac
cgaatcctgaacgatgcccgtgataagactggctcctctgcacagaaatccctctctgaa
tacaacaacttcaaatccatggtcgtggctggctccaaaggatcgaagattaacatttca
caggttattgctgtggtcggacagcagaacgtggaggggaagcgaattccctttggtttt
aagcaccgtacgctgccacacttcattaaggatgactacggtcctgagagcagaggcttt
gtggagaactcttacctcgctggcctgacccctacagagttcttcttccatgcaatggga
ggcagagagggtctgattgataccgctgtgaagactgcagaaactggttacattcagaga
cggttaatcaagtctatggaatctgtgatggtgaaatatgatgcaacagtccgcaactcc
atcaaccaagtgatccagctgcgttatggagaagatgggctggcaggggagtgtgtggag
ttccaaaacctggcatcagtgaaaccatcccacaaaaactttgagaagaagttcaaactg
gagtacaacaatgaacgaagtttacgcaggaccctgcaggaagacattgtgaaggagatc
ctcagcaatgctgccatccagaatgagctggaagtggagtttgagaggatgaaggaagac
cgagaggttctgagggctgtgttccccactggagacagcaaggtggtgctgccctgtaac
ctcctgcgaatgatctggaatgctcaaaaaatcttccacattaacactcggacggtgact
gatctacatccaatccgtgtgattgaaggggtgaaggagctgagtaagaagctaatcatt
gtgaatggtgaagatcccctgagtcgccaggctcaggagaacgctacgctgctgttcaac
atccacctgcgctccactctctgcagtcgacgtatgactgaggaattccggctcagcgga
gaggccttcgagtggctgctgggggagatcgaagccaagttcaaccagtccattgcacac
cctggggagatggtgggtgctttggctgcccagtcgctgggagagcctgccacacagatg
accctgaacaccttccactacgctggtgtgtcagccaagaacgtcacactgggtgtccct
cgtctgaaggagctgatcaatatctctaagaagccaaagaccccctcgctcacggtcttc
ctgctgggccagtccgcccgggatgcagaacgtgccaaggatatcctgtgccgactggag
cacaccaccttgaggaaggtcacggccaacactgccatctattacgaccctgacccccag
aacactgtggtctcagaggaccaggagtgggtcaatgtctactacgaaatgccagacttt
gacgtgacaaggatctccccctggcttctacgcatcgagcttgaccgtaagcacatgact
gaccgaaagctgaccatggagcagattgcagagaaaatcaacgctggtttcggtgatgat
ttaaactgcatctttaatgatgacaatgcggagaaactggttctcagaattcggatcatg
aacagtgacgagaataaatttcaagagcaagaggaggaagtggtggataagatggatgat
gatgtgttcctgcgctgtattgaatcgaacatgctgacagacatgacactacaggggatt
gaacagatcagcaaggtgtacatgcatctccctcagactgacaacaaaaagaagatcatt
attacagaggatggggagtttaaggctctccaggagtggattctggagacagatggagtc
agcctcatgagggtgctgagtgagaaggatgtggatccagtccgtacaacatccaacgac
attgtggagatcttcacggttctgggaattgaagccgtgcggaaagccttggagcgggag
ctgtatcacgtcatctccttcgatggctcctacgttaactatcgccacttgtcgctgctg
tgtgacaccatgacatgccggggtcacttgatggccatcacccgtcacggagtgaacagg
caggataccgggccactgatgaagtgttcctttgaggagacggtggatgttttaatggag
gcctcagctcacggtgagatggacccaatgaagggggtgtctgagaacatcatgctgggc
cagctcgccccagcaggaaccggatcgtttgacctgctgctcgatgctgagaaatgcaag
tacggcatggagatcccaaccaacatcgggggcctgggagtcggaggccctaccgggatg
ttctttggctctgcccccagcccaatgggagggatgtctccagcaatgaccccatggaat
cagggggcaactccagcttatggagcctggtcccccagtgtgggcagtggaatgaccccg
ggagctgccggcttctctcccagtgcagcgtccgatgctagtggcttcagtcccggatac
tctccagcatggtcccccacccccggctctcctggatcccctggtccatccagtccctac
attccttctccaggtggagcaatgtctcccagttactcaccaacctctcctgcctatgag
ccaaggtctcctggtggttatactcctcagagccccagctactcacccacctcaccctcc
tacagtcccacctcaccctcctactcccccaccagcccgaactacagtccgaccagcccc
agctacagtccgacatcccccagctacagcccgacatcccccagctacagcccgaccagt
ccctcctactcccccacctccccttcatattcccccactagccccagttactccccaacc
tcccctagttactcaccaactagtcccagttacagcccgacttcacccagttactcccca
accagtccctcatacagccctacctcgcccagttactccccgacctccccctcctattcc
cccacctcaccatcttacagccccacctctcctagttattctcccacctcccccaactat
actcccacctcccccaactacagccccaccagccccagttacagtcccacttctcccagt
tatacccccacctctcccaactacagtcccacctcacccagttacagtcccacttctccc
agttacagccctacctcccccagttactctccctccagccctcgctacacccctcagtca
ccaacctacactcccagctctcccagttacagccccagcagcccaagttactccccaacc
agccccaaatactcccccaccagcccctcctatagccccagctctccagaatacacacct
acgtctccaaaatacagccccaccagccccaaatacagtcccaccagcccgaaatattcc
ccgacctcccctacctactctcccaccacacccaagtacagcccgaccagccccacctac
tcccccccctcccccgtatacacccccacctctcccaagtactcacccacctctcccacc
tattctcctacctccccaaaatattcacccacctctcccacctactctcccaccagcccc
aagggctcaacctactctcccacttccccgggctactctcccacttcaccgacctacagc
ctcaccagtccagccatcagccccgaggacagcgacgaggagaactga
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integrated database retrieval system
