Rhincodon typus (whale shark): 109921448
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Entry
109921448 CDS
T06055
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109921448 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109921448 (prpf4)
Spliceosome [BR:
rtp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
109921448 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
PRP4
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_WDR11_1st
WD40_like
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
109921448
NCBI-ProteinID:
XP_048469400
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Position
28:complement(4046162..4091386)
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AA seq
506 aa
AA seq
DB search
MSDDDDAPLPKKSRIYYGSLEEKEKERISKGDAGYLGKDAVKAGVEAGHINISSNEFYEV
EEHVSERQAEVLAEFERRKRARQINVSTDDAEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGADALKKTEKTEDAKKSRQEHQQTWYHEGPSTLKTARVYIARFSLPRAVKRLEEA
RANKEIPEASRTARQQELHKSLRALNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLCK
LWGVPDCSLIRTLRGHSTNVGAIVFHPQATISLDEKDCNMASCAADGSVKLWNLESDEPV
ADIEGHTMRVARVAWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGVYDIAFHRD
GSLVGTGGLDAFGRLWDLRTGRCIMFLEGHLKEIYGISFSPNGYHTATGSGDNTCKVWDL
RQRKCIYTIPAHHNLLSAVRFQPTDGHYLLTGAYDNTAKIWTHPGWSPLKTMAGHEGKVM
GLDISPNGQLIATCSYDRTFKLWTSE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgatgatgatgctccgttgcctaagaaatctcggatttactatggaagcctt
gaagagaaggagaaagagaggatttccaaaggagatgcaggatacctggggaaagatgct
gtgaaagctggggtagaagctggacatattaatatatccagcaatgagttctatgaggtc
gaagagcacgtcagtgagaggcaagcggaggtactggcagagtttgaacgcagaaaacga
gcacggcagattaatgtttcgacagatgacgcagaagtgaaggcctgtctacgagcactt
ggagagccaatcactctttttggggaaggaccagcagaacgacgagagaggttacgtaac
atactgtctgtggtgggtgctgacgccttgaagaaaacagagaagacagaagatgcaaag
aaaagccgacaggagcatcagcaaacctggtatcatgagggccccagcaccttaaagact
gctcgtgtctacattgcccgcttttctctgccaagagctgtgaagcgactggaggaagcc
cgggcaaacaaggagattccagaggcttcacgaactgcgcgacagcaggagctccacaag
agcttacgagccctaaataatttctgcagccaaattggcgatgaccgacccatctcctac
tgccagttcagccccaactccaagctcctggttacagcttcttggagtgggctctgtaaa
ctttggggtgttcctgactgcagtcttattcgtacactgagaggtcacagcacaaatgtg
ggtgccattgtatttcatccccaggccaccatctcacttgatgagaaggactgtaacatg
gcatcatgtgccgctgatggctcagtgaaactctggaatctggaaagtgatgaaccagta
gctgacattgaaggacataccatgcgagttgctcgagtggcttggcacccatcaggcaga
ttcctgggcaccacatgttatgaccactcctggcgactctgggatctggaagctcaggag
gaaatcttgcaccaggaaggccatagcaagggtgtctacgacattgcctttcaccgtgat
ggctcactggtgggaactggaggcctagatgcctttgggcggctatgggatttacggaca
ggtcgatgcatcatgttcttggagggacacctgaaggagatctacgggatcagcttctct
cctaatggataccacacagcaacaggaagtggagataatacctgcaaagtttgggacctt
cgccagcggaaatgcatctataccatcccagcacaccacaacctcctgtctgcggtcagg
tttcagcccacggatggacattacctgctgactggtgcctatgacaacactgcaaagatt
tggacacaccctgggtggtcacctctcaaaaccatggctgggcatgagggcaaggtgatg
ggtttggacatctctccaaacgggcagctgatcgccacgtgttcatatgacaggaccttc
aaactctggacatctgagtag
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integrated database retrieval system
