Rhincodon typus (whale shark): 109921558
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Entry
109921558 CDS
T06055
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1-like isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04621
NOD-like receptor signaling pathway
rtp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
109921558
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109921558
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rtp04054
]
109921558
Pattern recognition receptors [BR:
rtp04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
109921558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
CARD
NLRC4_HD2
LRR_6
NOD2_WH
LRR_4
HTH_MCM7
AAA_22
AAA_16
Suv3_N
AAA_18
NPHP3_N
nSTAND3
PIF1
AAA_30
Motif
Other DBs
NCBI-GeneID:
109921558
NCBI-ProteinID:
XP_048465925
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All DBs
Position
2:complement(129845845..129885867)
Genome browser
AA seq
932 aa
AA seq
DB search
MEETAACKQQVASYLNLLAEHRVELVNEIKNTECILENLLQSGYFTTEDRELVQRKRTRH
DKVREILDIICNKGHEAAEYFVYVMYKAKDVYPELQDWIKIIEYQPSEHLERKAILLTDA
VCQYSEKLRCQLKRETKFVTSYSRKEDVLLDDTYTETLMERVNAVSETEGTISNLEDLFS
DTGIINEDAETVFVTGDAGVGKTILLQRLQNLWSKGELCADVKFFFKFRCRMFNNFEKED
KIYLRDLLFKYNCYPDKDADEIFSYIQQHADSVIFTLDGFDEINVDCNLSDIPDVSSPFD
PTHPVTLLLNLLQGNLLKNSRKLLTARTGTNLPLRMVRKRVTLKGFTKDNLLQYLKKFFR
NESHQTLVLTQLEANPHLCSLCSVPLFCWIIFKCYKHLQSECNSQQILDYVTLTDIYLLM
LEVFLNRSSKMRLNKRNKSQSETFKAKRDSLMSLGKLAKEGIESNNFIFSQEQIAAAGIS
EEDLQLGFVKSAGHYDGCGNQSTYEFLHLTLQSFFTALFLVVNERISAKEIIMFFTGKIP
RGGQSCPLSSSFSCKNSKRSSKEHLLESQEHFQLTVFFLCGLLSKTKVDVLNRLTCQISI
QKKRAALKSYLVGCVKTYMSNDFYQMRAAPRFKWLVRCIFEVQSKEVARLAAKKIHQDYI
KFTYCNVYSADCSAITFILRDLQKTIGLELDNNNINDYGVRELIPCFSKLRIIGLNANQI
TDEGVQVLSEELRKYKIVQFLGLYKNQITDAGAQYVSTLIDECPSLLKLAIGYNMITSEG
GKRLAQAVQKSKTIKYLWMWGNQVGDLGAEAFAQALRNHPSLKELSLAANGISTEGGKYL
ATALEDNNCLKTLWLTANKLDDEAARWFGNVLKVNRSLQTLWLVENNITLIGAKHLIDAL
KINNSMQEICLKSNKISIEETRALITEQRIVF
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaccgcagcctgtaaacagcaagtcgcctcttaccttaatcttctcgctgaa
catcgggtggagttagtaaacgaaattaaaaacactgaatgcatcttggaaaacctgcta
cagtctggatatttcaccacagaagacagggaacttgtacagaggaagagaactcgacac
gacaaggtgcgtgaaatccttgacataatatgcaacaaaggacatgaagctgctgagtat
tttgtatatgtgatgtacaaggctaaagatgtttatccagagctgcaggattggataaaa
ataattgagtatcaaccatctgagcatttagagagaaaggcaattctcctcacagatgct
gtttgtcagtattccgaaaagcttagatgtcaattgaaaagggaaacaaagttcgtcact
tcgtattcccggaaagaagacgtcttgttggatgatacttacactgagactctaatggaa
cgagtcaatgcagtcagtgaaactgaaggaaccatttccaacttggaggatttgttcagt
gacacaggcatcatcaatgaggatgcagagacagtgtttgtaactggtgatgctggggtt
ggtaagaccatcctgctccagagacttcagaacctgtggtccaaaggagagctctgtgct
gatgttaaattcttcttcaaatttagatgccgaatgttcaataacttcgaaaaggaagat
aagatttatctcagagatctactgttcaaatacaactgttaccctgacaaagacgctgat
gagatatttagttacatccaacagcatgcagattctgttatcttcacattggacgggttt
gatgaaattaatgttgactgcaaccttagtgatatccctgatgtctcttcaccctttgac
cccacacatccggtcactctgttgttgaacctgcttcagggaaatttattgaaaaactca
agaaaattattgacagcaagaactggcacaaacctgccattgagaatggtgagaaagaga
gtgacactaaagggctttacaaaggataatttactgcaatatttgaagaagttcttcaga
aatgaatcccatcaaactttggttttgacccagctggaggcaaacccccatctgtgtagt
ttatgttcagtgccattgttctgctggattatatttaaatgctacaagcacttacagtca
gaatgtaactcccagcaaatattggattatgtaacattgactgacatctacctgttgatg
ttggaggttttcctaaaccgttcttccaaaatgaggttgaacaaaagaaacaaaagtcaa
agtgagacattcaaagcgaagagggattctctaatgagtttgggaaaattggcaaaagag
ggaattgaaagcaataactttatctttagtcaggagcaaattgcagcagctggcatctca
gaggaggatttacagttgggttttgtcaagagtgcaggccactatgatggatgtgggaac
caatccacttatgaattccttcatctgaccctccagtcatttttcaccgcgcttttcctg
gttgttaatgagagaattagtgcgaaggaaatcattatgttttttactggcaagatacca
cgtggagggcagtcatgtccactcagctcttcattctcatgcaaaaactccaagaggagc
tcaaaagaacacttgctcgagtcccaagaacactttcaactaactgttttctttctttgt
ggcttgctttccaaaaccaaggtagatgtactgaatcgtttaacttgccaaataagcatt
caaaagaagagagcagcattgaaatcctaccttgttggctgtgtgaaaacatacatgagc
aatgatttctatcagatgcgagctgccccacgcttcaaatggctggtgagatgcatattt
gaagtgcagagcaaagaagtagccagacttgctgccaagaaaattcatcaagattatata
aagttcacctattgcaatgtctactcagcagactgcagtgcaatcacttttattttacgc
gaccttcagaaaacaattgggcttgagctagacaataacaacatcaatgactacggagtg
agagaactaattccttgcttcagtaaacttcgcattatcgggttgaatgcaaatcaaatc
acagatgagggagttcaagtgctatctgaagaacttagaaagtataaaattgttcaattt
cttggcttatacaaaaatcagattactgatgctggtgcccagtatgtttcaacacttatt
gatgaatgtccaagtctactcaagttggccattggttacaacatgattacatctgaagga
gggaaaagactggcacaagcagttcagaaaagtaaaacaatcaaatatctctggatgtgg
gggaatcaagttggagacttgggtgctgaagcttttgctcaagctttaagaaaccatcct
tctctaaaagagctcagtcttgcagcaaatggcatttccacagagggaggtaaatattta
gctacagcactggaagacaacaattgcctgaagacactctggcttacagcaaacaaactg
gacgatgaagcagcgaggtggtttggaaatgtgctcaaagtaaacaggagcctacaaacc
ttatggttggttgagaataacattacattgattggagcaaaacatctcattgatgcactg
aaaataaacaactcaatgcaagagatttgcctgaagagcaataaaatatccattgaagaa
accagagcccttattacagagcaacgcattgtgttctga
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