KEGG   Rhincodon typus (whale shark): 109921607
Entry
109921607         CDS       T06055                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp03030  DNA replication
rtp03410  Base excision repair
rtp03420  Nucleotide excision repair
rtp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109921607 (rfc4)
   03410 Base excision repair
    109921607 (rfc4)
   03420 Nucleotide excision repair
    109921607 (rfc4)
   03430 Mismatch repair
    109921607 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rtp03032]
    109921607 (rfc4)
   03036 Chromosome and associated proteins [BR:rtp03036]
    109921607 (rfc4)
   03400 DNA repair and recombination proteins [BR:rtp03400]
    109921607 (rfc4)
DNA replication proteins [BR:rtp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    109921607 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    109921607 (rfc4)
Chromosome and associated proteins [BR:rtp03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    109921607 (rfc4)
DNA repair and recombination proteins [BR:rtp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     109921607 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    109921607 (rfc4)
SSDB
Motif
Pfam: AAA DNA_pol3_delta2 Rad17 AAA_16 AAA_22 AAA_11 Mg_chelatase DUF815 AAA_24 AAA_14 AAA_30 SLFN-g3_helicase AAA_28 AAA_19 RuvB_N ResIII AAA_5 AAA_7 Kinesin Toxin_7
Other DBs
NCBI-GeneID: 109921607
NCBI-ProteinID: XP_048460359
LinkDB
Position
13:complement(2925395..2946033)
AA seq 235 aa
MQAFLKGPGVISSKPVKEKAAAGTSGENKKQKPVPWVEKYRPKCVSEVAFQEEVVAVLKK
SLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELYRKRILELNASDERGIQVIREKVK
NFAQLTVAGSRPDGKPAPPFKIVILDEADSMTNAAQAALRRTMERESKTTRFCLICNYIS
RIIEPLTSRCSKFRFKPLTDDIQQKRLLDICVKENMQCSDQVGLWCCVTCLEFKF
NT seq 708 nt   +upstreamnt  +downstreamnt
atgcaagcatttttaaaaggacctggagtgatcagctctaaaccagtgaaagaaaaagct
gcagcaggaaccagtggagagaacaaaaagcaaaaaccagttccatgggtggagaaatac
cgtccaaaatgtgtctctgaagtggcatttcaggaggaagttgtggctgtgctaaagaag
tcacttgaaggagctgatcttcctaatttgcttttttatggacctcctggcacaggaaaa
acttctacaatactcgctgcagcgagggaactttttggaccggagttgtaccggaagaga
attcttgaactaaatgcctctgatgaacgtggtatccaggttattcgagaaaaggtgaaa
aactttgcacaattgactgtagctggctctcgcccagatggaaaacctgctccaccattt
aaaatcgtcatcttagatgaagcagattccatgacgaatgctgcacaagctgctcttcgc
cgaacaatggaaagagaatcaaaaaccacacgtttctgcctaatttgcaactatatcagc
aggataattgaaccactaacatctcgatgttcaaagttccgttttaaacctttgacagac
gacatacagcagaaaaggttgctggacatctgtgtgaaggagaatatgcaatgcagcgat
caagtaggtctctggtgttgtgtgacatgtttagagttcaaattttaa

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