KEGG   Rhincodon typus (whale shark): 109921738
Entry
109921738         CDS       T06055                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL isoform X1
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    109921738
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rtp01009]
    109921738
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rtp03021]
    109921738
Protein phosphatases and associated proteins [BR:rtp01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     109921738
Transcription machinery [BR:rtp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     109921738
    Little elongation complex (LEC)
     109921738
SSDB
Motif
Pfam: ELL Occludin_ELL UBR1-like_wing
Other DBs
NCBI-GeneID: 109921738
NCBI-ProteinID: XP_048471918
LinkDB
Position
33:8892951..8982936
AA seq 645 aa
MAAVTLGEERSFGLSCEKLNPGARLSLFHVKLTDTAVRALEAYRRLAVSERAPRGRQGAE
RASLPNQPVICFQGNQGQYIKIPAPKSDCHDGVRCFSFYLSTDSKDKPQASFDCIHQYVS
SFEKDQLDCLGSIQDKITVCATDDSYQMTRERVSQVEKESWSRTTIEIKPDSSCQGVRKP
VHFRKQTVSPAGDGIPLRKPSPTMNPSFGMKKNCISTVTQRPLKDRLIHLLALKPYKKPE
LLLWLEREKANPKDKTELSSVLEQVAKVNVKDNNSYTLKDELYKEIQQDWPGYSDEEKQL
IRRHLIRLTFMKRQPSHSSQTKSSQLSSPFQKSSGESSPQSSPVKNALMKRPVPLERIDS
HTNKRSKVFQSKDHLQLVSNGQHPRSVCLTATANSCVTVKTEFQQTHTSLPGCPNEFNET
FKKCNNSSKSDLSRSDTEFKSKRDTTGNPRNQVAQASLEQTAYPLRESAELSASHYKKKS
KKHKENVREHTRSEVRTWRKESPIHQVGKLHEETNEEHETTNTSATASSTVEMPDYLLKY
TAITSLELYQNYRNDFNAEYSEYRDLHAKIGSVTERFMQLGSKIKTLSPGTEDYKMVEDQ
IFEEYRKFKKTHPTYQEEKVRCEYLHRKLSHIKQLILEFDPNQMS
NT seq 1938 nt   +upstreamnt  +downstreamnt
atggcggcggtaacgctgggtgaggagcggagctttgggctgtcctgtgagaaactgaac
ccgggagcgcggctctcgctgtttcatgtcaaactgacggacaccgccgttagggcgctc
gaggcttatcgtcggctggcggttagtgagcgcgcgccccgcgggcggcagggggcagag
agagcttccttaccgaatcaaccagtaatctgcttccagggaaatcaggggcagtacatc
aaaattcctgctcctaaatcagactgccatgatggtgtgcgatgtttttcattctacttg
tcaaccgacagcaaggacaagccgcaagcaagttttgactgtatacaccagtatgtttca
agtttcgaaaaagatcaacttgactgcctggggagtattcaggataaaatcacagtttgt
gccactgatgactcttaccagatgactcgagaacgggtgtcacaagtagaaaaggagtca
tggagtcgaacaactatagaaattaaaccagactcatcatgtcaaggtgtgcgaaagcca
gtccattttcgaaagcaaacagtaagtcctgctggagatggcattccacttcgaaaaccc
tctcctaccatgaatccaagctttggaatgaagaaaaactgtatcagtacagttacccaa
agacctcttaaagatcgcctcatccatcttttagctttgaagccctataaaaagcctgag
ctgcttctatggttggagagagagaaagcaaatccgaaggacaaaacggaactgtcttct
gtattggagcaggtagcaaaggtaaatgtaaaggacaacaacagctatacactaaaagat
gagctctacaaggaaattcaacaggattggcctggttatagtgatgaagaaaaacagttg
attcgaagacacctaataaggttgacattcatgaagcggcaaccatctcattccagtcag
accaagagttcacaactcagttctccattccagaagtcctcaggggaatcttcaccacaa
tccagccctgtcaagaatgctttaatgaaaagaccagtgcctttggagcggatagattcg
cacacaaacaaaagaagtaaagtattccagtccaaggatcatctgcagcttgtttcaaat
ggacaacatcctcgttcagtatgccttactgccacagcaaattcctgtgtaactgttaaa
accgagttccagcagacccacacttcgctgcctgggtgtccaaatgagtttaatgaaaca
tttaaaaagtgcaacaattcttcaaaaagtgacttaagcagaagtgacacagaattcaaa
agcaaaagggatactactggtaaccctaggaaccaggttgcacaggcgagtttagaacag
acagcttatcctctgagagagagtgcggagctctctgctagtcactataaaaaaaaatct
aaaaaacacaaagaaaatgtgagagaacatacaagatctgaagtaagaacgtggcgaaaa
gaaagtccaatacatcaggttggaaaactgcatgaagagactaacgaagagcatgaaacc
acaaatacatctgcaaccgctagttcaacagtggaaatgcctgactatttattaaagtac
actgcaattacatctttagaattgtaccagaattatcggaatgacttcaatgcagaatac
agtgaatatagggatcttcatgcaaaaattggaagtgtaactgagcggttcatgcagttg
ggatcaaaaatcaaaacacttagcccgggaacagaggattacaagatggtggaggaccaa
atatttgaggaatataggaaatttaaaaagacccatcccacatatcaggaagagaaggtt
cgctgtgagtacctacaccggaagctatcgcacatcaaacagttaatattggaatttgac
ccaaaccagatgtcatga

DBGET integrated database retrieval system