Rhincodon typus (whale shark): 109922206
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Entry
109922206 CDS
T06055
Symbol
sdc4
Name
(RefSeq) syndecan-4
KO
K16338
syndecan 4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04512
ECM-receptor interaction
rtp04514
Cell adhesion molecule (CAM) interaction
rtp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109922206 (sdc4)
04514 Cell adhesion molecule (CAM) interaction
109922206 (sdc4)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109922206 (sdc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rtp00535
]
109922206 (sdc4)
Proteoglycans [BR:
rtp00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
109922206 (sdc4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
GP1BB_C
Dsc3_C
Glycophorin_A
zf-CCCH_7
MtrF
Motif
Other DBs
NCBI-GeneID:
109922206
NCBI-ProteinID:
XP_020377814
LinkDB
All DBs
Position
19:complement(7119194..7145460)
Genome browser
AA seq
191 aa
AA seq
DB search
MFGIKSLAVLFLISLGGISSANTQKSLLSERNHFDNPEGSGFPGRNKLQYPFYEQEEGSG
FASGDDHDLDDGQGPIDDEDDEMDNHIDESDEDVISEVEDPIISNEVLQRNNAVPQEDIS
NQVAMASTNSSSVFESTEMLAAMIAGGTIGLLFAILLILLLIYRMRKKDEGSYDLSKKPI
YKKAPTTEFYA
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgttcggaatcaaatcgctggctgtcctgtttctgatttccctgggcggaatttcttca
gccaacacgcaaaagtcattactttcggaaaggaaccactttgataatccagagggttca
gggttccctggacgaaacaaacttcaatatcctttctacgagcaagaagaaggttctggt
ttcgcctctggagatgaccatgatctggatgatggtcaaggaccaatcgatgatgaggat
gatgaaatggacaaccatattgacgaaagtgatgaggatgtcatctctgaagtagaagat
cccattatcagcaatgaggtgctgcagaggaacaacgctgtaccacaggaagacatcagt
aaccaggttgctatggcaagcacaaatagcagcagtgtctttgaaagtacagagatgctt
gcagcaatgattgctggtggtacaattggccttctgtttgccatccttctcatcctgctg
ctcatttaccgtatgaggaagaaggacgaaggcagctatgacctgagcaaaaagccaatt
tacaagaaggcaccaaccactgagttctatgcataa
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