Rhincodon typus (whale shark): 109922223
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Entry
109922223 CDS
T06055
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
109922223 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rtp04054
]
109922223 (dhx58)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109922223 (dhx58)
Pattern recognition receptors [BR:
rtp04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
109922223 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
ResIII
DEAD
SWI2_SNF2
AAA_19
HydF_dimer
Motif
Other DBs
NCBI-GeneID:
109922223
NCBI-ProteinID:
XP_048470373
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All DBs
Position
30:26038592..26224256
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AA seq
486 aa
AA seq
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MQIDLRNYQWEVIQPALRGKNIIIWLPTGGGKTRAAVFVTRYHLETKGGKGKVAVLVNKV
PLVNQHYENEFEPALKHAYRVAPISGDSELKDHFALAVRNYDVIICTAQILQNALTSTEE
EKHVDLTEFSLLIIDECHHTQKDGVYNKIMGHYIEKKHQHTKGLPQILGLTASPGTDGAN
TLERAKKHILQICANMDAAMITSSKECVKELKDSIPQPVKIYDITEERKEDPFGDTIKVM
MRTIHSYLNVPSILGLFGSQIYEQSVVELEKEGAITFDRKKRNCALHLRKYNDSLLINDT
VRMIDAFQNLAEFYSTEESSKNSLDQTDGFLLKVFNDYKTKLHLLALNKAYENPKLDKLE
QTLLRRFKDSNSRGIVFTKTRQSTHAMLGWIKSSDKLQAAGIKAESLTGAGVNSQTKHMT
QDLVLFISYVISSNVCNDVLLILLSFENILHTLRDSFDPGSGEATYHSDILLLAAESSVC
ASSYHN
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattgatctgcggaactaccagtgggaggttatacagcctgctcttcggggcaag
aatatcatcatatggctcccaacaggtgggggcaagacccgtgcagctgtgtttgttacc
agataccacctagaaacaaagggaggcaaaggcaaagtagctgttcttgtaaataaggtg
cctctggtgaaccaacattatgaaaacgagtttgagcctgcgctgaagcatgcgtatcgg
gtggcgcccataagtggtgacagtgaactgaaagatcattttgcactcgctgtccggaat
tatgatgtcattatctgcacagcacagattctgcaaaatgcactgaccagcactgaagaa
gaaaagcatgtggacctaacagaattctcgctgctgataattgatgagtgtcatcacacc
cagaaagatggagtatataataaaatcatgggacactatattgagaaaaagcatcagcat
acaaagggtttacctcagatccttggattgacagcatcacccggaacagatggagccaac
actttggaacgtgcaaagaaacatatcttacagatctgtgctaatatggatgccgctatg
ataacatcctccaaggagtgtgtaaaagagctaaaagatagcatccctcagcctgtaaaa
atatatgacattacagaagaaagaaaagaggacccctttggggacacaattaaagtgatg
atgagaactatccactcctatttgaacgtaccttcaattttgggtcttttcgggtcacag
atttatgagcaatcagttgtggagttggagaaagaaggagccattacttttgacagaaaa
aagcgtaactgtgcccttcacctccggaaatacaatgattcccttctgatcaatgacaca
gtgcgcatgattgatgcctttcagaaccttgcagaattctacagtactgaggagagcagc
aaaaatagtcttgatcaaacagatgggttcctcctcaaagtatttaatgattataaaacc
aagctgcacttacttgccttaaataaagcgtatgaaaatccgaagctggacaaattggag
caaactctcctgaggcgattcaaggactcaaactcccgagggattgtcttcacaaaaaca
cgacagagcactcatgccatgctgggctggatcaagagtagtgacaagttacaggcagct
gggatcaaggcggaaagtctaacaggggctggtgttaatagccagacaaagcacatgact
caggatcttgtcctttttatttcctatgtcattagttccaatgtgtgcaatgacgtcctg
ctgatcctgctgtcctttgagaatattctgcacactctccgagatagctttgatcctggc
tccggggaggcaacatatcattctgacatcttattgttggctgcagaatcttctgtctgt
gcctcgagctatcacaattga
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